miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 156563 0.73 0.100012
Target:  5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3'
miRNA:   3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 160415 0.73 0.1042
Target:  5'- uGCACAaggCCCCCCaCCCCCCCUgaagcgugccgcgaCGCCGg -3'
miRNA:   3'- -UGUGUg--GGGGGG-GGGGGGGG--------------GCGGUa -5'
9640 5' -70.1 NC_002577.1 + 136923 0.73 0.1042
Target:  5'- uGCACAaggCCCCCCaCCCCCCCUgaagcgugccgcgaCGCCGg -3'
miRNA:   3'- -UGUGUg--GGGGGG-GGGGGGGG--------------GCGGUa -5'
9640 5' -70.1 NC_002577.1 + 133672 0.72 0.130176
Target:  5'- -aAUAUCCCCCCCugcauuucaCCCCCCCCcCCAa -3'
miRNA:   3'- ugUGUGGGGGGGG---------GGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 164047 0.72 0.130177
Target:  5'- -aAUAUCCCCCCCugcauuucaCCCCCCCCcCCAa -3'
miRNA:   3'- ugUGUGGGGGGGG---------GGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 3696 0.71 0.133302
Target:  5'- --cCGCCCCCCCCCCCCCacauaggaaCCucuguuccauCGCCAUc -3'
miRNA:   3'- uguGUGGGGGGGGGGGGG---------GG----------GCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 125968 0.71 0.133302
Target:  5'- uGCGCGaaugcgucuuuCCCCCUuccaaggccuaaCCCCCCCCCCGCg-- -3'
miRNA:   3'- -UGUGU-----------GGGGGG------------GGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 129918 0.71 0.133302
Target:  5'- --cCGCCCCCCCCCCCCCacauaggaaCCucuguuccauCGCCAUc -3'
miRNA:   3'- uguGUGGGGGGGGGGGGG---------GG----------GCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 7645 0.71 0.133302
Target:  5'- uGCGCGaaugcgucuuuCCCCCUuccaaggccuaaCCCCCCCCCCGCg-- -3'
miRNA:   3'- -UGUGU-----------GGGGGG------------GGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 126616 0.71 0.139761
Target:  5'- aACuCAgCCCCCCCUCCCCUCaCGaCCAUu -3'
miRNA:   3'- -UGuGUgGGGGGGGGGGGGGG-GC-GGUA- -5'
9640 5' -70.1 NC_002577.1 + 6997 0.71 0.139761
Target:  5'- aACuCAgCCCCCCCUCCCCUCaCGaCCAUu -3'
miRNA:   3'- -UGuGUgGGGGGGGGGGGGGG-GC-GGUA- -5'
9640 5' -70.1 NC_002577.1 + 4068 0.71 0.146505
Target:  5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3'
miRNA:   3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5'
9640 5' -70.1 NC_002577.1 + 129545 0.71 0.146505
Target:  5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3'
miRNA:   3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5'
9640 5' -70.1 NC_002577.1 + 122163 0.7 0.160891
Target:  5'- cACACAUCCUCCCgCCCCCacaaccuccuCCCCGgCGg -3'
miRNA:   3'- -UGUGUGGGGGGG-GGGGG----------GGGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 11451 0.7 0.160891
Target:  5'- cACACAUCCUCCCgCCCCCacaaccuccuCCCCGgCGg -3'
miRNA:   3'- -UGUGUGGGGGGG-GGGGG----------GGGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 154782 0.7 0.162397
Target:  5'- -gGC-CCCCCCUCCCCCacgcagcgccuauugCCCCGUCGc -3'
miRNA:   3'- ugUGuGGGGGGGGGGGG---------------GGGGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 142554 0.7 0.162397
Target:  5'- -gGC-CCCCCCUCCCCCacgcagcgccuauugCCCCGUCGc -3'
miRNA:   3'- ugUGuGGGGGGGGGGGG---------------GGGGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 11534 0.69 0.184858
Target:  5'- gGC-UACCCUCCCUCCCCCCUCuCCu- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 122080 0.69 0.184858
Target:  5'- gGC-UACCCUCCCUCCCCCCUCuCCu- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 139217 0.69 0.193522
Target:  5'- -aAUGCCCCCCCCgCCCgCCaCCGCg-- -3'
miRNA:   3'- ugUGUGGGGGGGGgGGG-GG-GGCGgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.