miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 158121 0.69 0.193523
Target:  5'- -aAUGCCCCCCCCgCCCgCCaCCGCg-- -3'
miRNA:   3'- ugUGUGGGGGGGGgGGG-GG-GGCGgua -5'
9640 5' -70.1 NC_002577.1 + 75222 0.69 0.193523
Target:  5'- cGCACGCCCUCUCCCCagCUUUCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGGGGGg-GGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 156864 0.68 0.218709
Target:  5'- uCGCACCCgCUCCCCUccggagcgaccgaguCCCagCCCGCCGUa -3'
miRNA:   3'- uGUGUGGG-GGGGGGG---------------GGG--GGGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 140473 0.68 0.218709
Target:  5'- uCGCACCCgCUCCCCUccggagcgaccgaguCCCagCCCGCCGUa -3'
miRNA:   3'- uGUGUGGG-GGGGGGG---------------GGG--GGGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 6027 0.68 0.221674
Target:  5'- ----uUCUCCCCCCCCCCUCC-CCAc -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 8978 0.68 0.221674
Target:  5'- uACGCACggaCUCCCCCgCCCgCGCCAUc -3'
miRNA:   3'- -UGUGUGgg-GGGGGGGgGGGgGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 127586 0.68 0.221674
Target:  5'- ----uUCUCCCCCCCCCCUCC-CCAc -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 10724 0.68 0.226692
Target:  5'- gGguCGCCCCCCgacuuuCCCCCCggCCCCGCa-- -3'
miRNA:   3'- -UguGUGGGGGG------GGGGGG--GGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 158439 0.68 0.226692
Target:  5'- -aGCGCCCauguuUCCCCCCCUUCCCGuuCCAg -3'
miRNA:   3'- ugUGUGGG-----GGGGGGGGGGGGGC--GGUa -5'
9640 5' -70.1 NC_002577.1 + 122889 0.68 0.226692
Target:  5'- gGguCGCCCCCCgacuuuCCCCCCggCCCCGCa-- -3'
miRNA:   3'- -UguGUGGGGGG------GGGGGG--GGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 138899 0.68 0.226692
Target:  5'- -aGCGCCCauguuUCCCCCCCUUCCCGuuCCAg -3'
miRNA:   3'- ugUGUGGG-----GGGGGGGGGGGGGC--GGUa -5'
9640 5' -70.1 NC_002577.1 + 130023 0.68 0.231806
Target:  5'- cACGgGCCCUCUCUCgCCCCUCCGCg-- -3'
miRNA:   3'- -UGUgUGGGGGGGGG-GGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 3591 0.68 0.231806
Target:  5'- cACGgGCCCUCUCUCgCCCCUCCGCg-- -3'
miRNA:   3'- -UGUgUGGGGGGGGG-GGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 6083 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 127530 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 127491 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 6122 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 124176 0.68 0.242325
Target:  5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3'
miRNA:   3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 9438 0.68 0.242326
Target:  5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3'
miRNA:   3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 8656 0.67 0.269778
Target:  5'- cACACACCCCCacacacaCCCCCacacaCCCCCacacacaccgcgGCUAc -3'
miRNA:   3'- -UGUGUGGGGG-------GGGGGg----GGGGG------------CGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.