miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 124176 0.68 0.242325
Target:  5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3'
miRNA:   3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 124719 0.74 0.090775
Target:  5'- cACGCAUUCCCggucgcccgucgCCCCCCCCCUCGCaCAUc -3'
miRNA:   3'- -UGUGUGGGGG------------GGGGGGGGGGGCG-GUA- -5'
9640 5' -70.1 NC_002577.1 + 124797 0.66 0.300955
Target:  5'- uGCGCguGCCCCUCCCCCaacuaaCCCUUCGCgCGc -3'
miRNA:   3'- -UGUG--UGGGGGGGGGG------GGGGGGCG-GUa -5'
9640 5' -70.1 NC_002577.1 + 124957 0.67 0.269778
Target:  5'- cACACACCCCCacacacaCCCCCacacaCCCCCacacacaccgcgGCUAc -3'
miRNA:   3'- -UGUGUGGGGG-------GGGGGg----GGGGG------------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 125307 1.04 0.000451
Target:  5'- cACACACCCCCCCCCCCCCCCCGCCAUc -3'
miRNA:   3'- -UGUGUGGGGGGGGGGGGGGGGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 125837 0.86 0.01085
Target:  5'- cGCACGguucggaucccCCCCCCCCCCCCCCCCGCa-- -3'
miRNA:   3'- -UGUGU-----------GGGGGGGGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 125968 0.71 0.133302
Target:  5'- uGCGCGaaugcgucuuuCCCCCUuccaaggccuaaCCCCCCCCCCGCg-- -3'
miRNA:   3'- -UGUGU-----------GGGGGG------------GGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 126037 0.67 0.280475
Target:  5'- cCAUuuaucuuCCCCCCCgcguaaacaauuauCCCUCCCCCGCgCGUc -3'
miRNA:   3'- uGUGu------GGGGGGG--------------GGGGGGGGGCG-GUA- -5'
9640 5' -70.1 NC_002577.1 + 126168 0.66 0.327302
Target:  5'- aGCAUGCCCUguaCCCCaCCCCCCUuCUAa -3'
miRNA:   3'- -UGUGUGGGGg--GGGG-GGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 126476 0.81 0.026264
Target:  5'- cGCAUcuCCCCCCCCCCCCCCCCuCCc- -3'
miRNA:   3'- -UGUGu-GGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 126616 0.71 0.139761
Target:  5'- aACuCAgCCCCCCCUCCCCUCaCGaCCAUu -3'
miRNA:   3'- -UGuGUgGGGGGGGGGGGGGG-GC-GGUA- -5'
9640 5' -70.1 NC_002577.1 + 127149 0.83 0.01711
Target:  5'- uCAgGCCUCCCCCCCCCCCCaCGCCu- -3'
miRNA:   3'- uGUgUGGGGGGGGGGGGGGG-GCGGua -5'
9640 5' -70.1 NC_002577.1 + 127491 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 127530 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 127586 0.68 0.221674
Target:  5'- ----uUCUCCCCCCCCCCUCC-CCAc -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 127709 0.66 0.31392
Target:  5'- ----cCCCCCCCCUCCCCUCUuCCu- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 129194 0.66 0.300955
Target:  5'- cACGCGCCCCCCCauaCUcggcgcgcguaCCCgCgGCCAUc -3'
miRNA:   3'- -UGUGUGGGGGGGg--GG-----------GGGgGgCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 129545 0.71 0.146505
Target:  5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3'
miRNA:   3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5'
9640 5' -70.1 NC_002577.1 + 129918 0.71 0.133302
Target:  5'- --cCGCCCCCCCCCCCCCacauaggaaCCucuguuccauCGCCAUc -3'
miRNA:   3'- uguGUGGGGGGGGGGGGG---------GG----------GCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 130023 0.68 0.231806
Target:  5'- cACGgGCCCUCUCUCgCCCCUCCGCg-- -3'
miRNA:   3'- -UGUgUGGGGGGGGG-GGGGGGGCGgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.