miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 131095 0.9 0.004939
Target:  5'- cCACACCCCCCCCCCCCCCCCGaaaaCCGa -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGC----GGUa -5'
9640 5' -70.1 NC_002577.1 + 131803 0.77 0.054203
Target:  5'- ----cCCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGCggua -5'
9640 5' -70.1 NC_002577.1 + 131882 0.75 0.069377
Target:  5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3'
miRNA:   3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5'
9640 5' -70.1 NC_002577.1 + 132648 0.77 0.048959
Target:  5'- cCGCAUCCCCcccucaaCCCCCCCCCCCcCCGUa -3'
miRNA:   3'- uGUGUGGGGG-------GGGGGGGGGGGcGGUA- -5'
9640 5' -70.1 NC_002577.1 + 133672 0.72 0.130176
Target:  5'- -aAUAUCCCCCCCugcauuucaCCCCCCCCcCCAa -3'
miRNA:   3'- ugUGUGGGGGGGG---------GGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 134171 0.9 0.005331
Target:  5'- uCGCGCCCCCCCCCCCCCCCC-CCGa -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 134369 0.84 0.013977
Target:  5'- cAC-CACCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGCggua -5'
9640 5' -70.1 NC_002577.1 + 135183 0.77 0.052876
Target:  5'- -gACucCCCCCgCCCCCCCCCCCGaCCu- -3'
miRNA:   3'- ugUGu-GGGGG-GGGGGGGGGGGC-GGua -5'
9640 5' -70.1 NC_002577.1 + 136923 0.73 0.1042
Target:  5'- uGCACAaggCCCCCCaCCCCCCCUgaagcgugccgcgaCGCCGg -3'
miRNA:   3'- -UGUGUg--GGGGGG-GGGGGGGG--------------GCGGUa -5'
9640 5' -70.1 NC_002577.1 + 138899 0.68 0.226692
Target:  5'- -aGCGCCCauguuUCCCCCCCUUCCCGuuCCAg -3'
miRNA:   3'- ugUGUGGG-----GGGGGGGGGGGGGC--GGUa -5'
9640 5' -70.1 NC_002577.1 + 139217 0.69 0.193522
Target:  5'- -aAUGCCCCCCCCgCCCgCCaCCGCg-- -3'
miRNA:   3'- ugUGUGGGGGGGGgGGG-GG-GGCGgua -5'
9640 5' -70.1 NC_002577.1 + 139486 0.67 0.276275
Target:  5'- -aACGCCgCCCUCUgaaUCCCCCCGCgGUc -3'
miRNA:   3'- ugUGUGGgGGGGGG---GGGGGGGCGgUA- -5'
9640 5' -70.1 NC_002577.1 + 139836 0.74 0.090775
Target:  5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3'
miRNA:   3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 140473 0.68 0.218709
Target:  5'- uCGCACCCgCUCCCCUccggagcgaccgaguCCCagCCCGCCGUa -3'
miRNA:   3'- uGUGUGGG-GGGGGGG---------------GGG--GGGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 140704 0.76 0.056533
Target:  5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5'
9640 5' -70.1 NC_002577.1 + 140729 0.66 0.307385
Target:  5'- ---aGCCCCCCUCCUCCUa-CGCCAc -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGggGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 140775 0.73 0.100012
Target:  5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3'
miRNA:   3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 140806 0.67 0.270364
Target:  5'- cUACACCaCCUCCCCUuagCCCCCCuCCu- -3'
miRNA:   3'- uGUGUGG-GGGGGGGG---GGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 140909 0.75 0.071102
Target:  5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3'
miRNA:   3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 141503 0.66 0.334151
Target:  5'- cGCAUcgcuucuuGCCCCCCgCCCaacaccaccaCCaCCCCGCCc- -3'
miRNA:   3'- -UGUG--------UGGGGGGgGGG----------GG-GGGGCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.