miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 153449 0.67 0.288408
Target:  5'- gGCACACUCCaCgCUauUUCCCCCCGCCc- -3'
miRNA:   3'- -UGUGUGGGG-GgGG--GGGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 144146 0.82 0.020417
Target:  5'- uCAUcCCCCCCCCCCCCCCCCcCCGa -3'
miRNA:   3'- uGUGuGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 143729 0.77 0.052876
Target:  5'- cACAUACCCCCCCUCCCCcagCCCCGaCGa -3'
miRNA:   3'- -UGUGUGGGGGGGGGGGG---GGGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 142554 0.7 0.162397
Target:  5'- -gGC-CCCCCCUCCCCCacgcagcgccuauugCCCCGUCGc -3'
miRNA:   3'- ugUGuGGGGGGGGGGGG---------------GGGGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 142295 0.88 0.007607
Target:  5'- cCGCGCCCCCCCCCCCCCCCCcCCc- -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 142212 0.78 0.045553
Target:  5'- cAC-CACCaCCCCCCCCCCCCC-CCAa -3'
miRNA:   3'- -UGuGUGGgGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 141503 0.66 0.334151
Target:  5'- cGCAUcgcuucuuGCCCCCCgCCCaacaccaccaCCaCCCCGCCc- -3'
miRNA:   3'- -UGUG--------UGGGGGGgGGG----------GG-GGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 140909 0.75 0.071102
Target:  5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3'
miRNA:   3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 140806 0.67 0.270364
Target:  5'- cUACACCaCCUCCCCUuagCCCCCCuCCu- -3'
miRNA:   3'- uGUGUGG-GGGGGGGG---GGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 140775 0.73 0.100012
Target:  5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3'
miRNA:   3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 140729 0.66 0.307385
Target:  5'- ---aGCCCCCCUCCUCCUa-CGCCAc -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGggGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 140704 0.76 0.056533
Target:  5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5'
9640 5' -70.1 NC_002577.1 + 140473 0.68 0.218709
Target:  5'- uCGCACCCgCUCCCCUccggagcgaccgaguCCCagCCCGCCGUa -3'
miRNA:   3'- uGUGUGGG-GGGGGGG---------------GGG--GGGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 139836 0.74 0.090775
Target:  5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3'
miRNA:   3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 139486 0.67 0.276275
Target:  5'- -aACGCCgCCCUCUgaaUCCCCCCGCgGUc -3'
miRNA:   3'- ugUGUGGgGGGGGG---GGGGGGGCGgUA- -5'
9640 5' -70.1 NC_002577.1 + 139217 0.69 0.193522
Target:  5'- -aAUGCCCCCCCCgCCCgCCaCCGCg-- -3'
miRNA:   3'- ugUGUGGGGGGGGgGGG-GG-GGCGgua -5'
9640 5' -70.1 NC_002577.1 + 138899 0.68 0.226692
Target:  5'- -aGCGCCCauguuUCCCCCCCUUCCCGuuCCAg -3'
miRNA:   3'- ugUGUGGG-----GGGGGGGGGGGGGC--GGUa -5'
9640 5' -70.1 NC_002577.1 + 136923 0.73 0.1042
Target:  5'- uGCACAaggCCCCCCaCCCCCCCUgaagcgugccgcgaCGCCGg -3'
miRNA:   3'- -UGUGUg--GGGGGG-GGGGGGGG--------------GCGGUa -5'
9640 5' -70.1 NC_002577.1 + 135183 0.77 0.052876
Target:  5'- -gACucCCCCCgCCCCCCCCCCCGaCCu- -3'
miRNA:   3'- ugUGu-GGGGG-GGGGGGGGGGGC-GGua -5'
9640 5' -70.1 NC_002577.1 + 134369 0.84 0.013977
Target:  5'- cAC-CACCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGCggua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.