Results 81 - 100 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 9694 | 0.78 | 0.044432 |
Target: 5'- ----uCCCCCCCCCCCCCCCCaaGCCc- -3' miRNA: 3'- uguguGGGGGGGGGGGGGGGG--CGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 9438 | 0.68 | 0.242326 |
Target: 5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3' miRNA: 3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 8978 | 0.68 | 0.221674 |
Target: 5'- uACGCACggaCUCCCCCgCCCgCGCCAUc -3' miRNA: 3'- -UGUGUGgg-GGGGGGGgGGGgGCGGUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 8895 | 0.74 | 0.090775 |
Target: 5'- cACGCAUUCCCggucgcccgucgCCCCCCCCCUCGCaCAUc -3' miRNA: 3'- -UGUGUGGGGG------------GGGGGGGGGGGCG-GUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 8817 | 0.66 | 0.300955 |
Target: 5'- uGCGCguGCCCCUCCCCCaacuaaCCCUUCGCgCGc -3' miRNA: 3'- -UGUG--UGGGGGGGGGG------GGGGGGCG-GUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 8656 | 0.67 | 0.269778 |
Target: 5'- cACACACCCCCacacacaCCCCCacacaCCCCCacacacaccgcgGCUAc -3' miRNA: 3'- -UGUGUGGGGG-------GGGGGg----GGGGG------------CGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 8307 | 1.04 | 0.000451 |
Target: 5'- cACACACCCCCCCCCCCCCCCCGCCAUc -3' miRNA: 3'- -UGUGUGGGGGGGGGGGGGGGGCGGUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 7776 | 0.86 | 0.01085 |
Target: 5'- cGCACGguucggaucccCCCCCCCCCCCCCCCCGCa-- -3' miRNA: 3'- -UGUGU-----------GGGGGGGGGGGGGGGGCGgua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 7645 | 0.71 | 0.133302 |
Target: 5'- uGCGCGaaugcgucuuuCCCCCUuccaaggccuaaCCCCCCCCCCGCg-- -3' miRNA: 3'- -UGUGU-----------GGGGGG------------GGGGGGGGGGCGgua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 7577 | 0.67 | 0.280475 |
Target: 5'- cCAUuuaucuuCCCCCCCgcguaaacaauuauCCCUCCCCCGCgCGUc -3' miRNA: 3'- uGUGu------GGGGGGG--------------GGGGGGGGGCG-GUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 7446 | 0.66 | 0.327302 |
Target: 5'- aGCAUGCCCUguaCCCCaCCCCCCUuCUAa -3' miRNA: 3'- -UGUGUGGGGg--GGGG-GGGGGGGcGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 7137 | 0.81 | 0.026264 |
Target: 5'- cGCAUcuCCCCCCCCCCCCCCCCuCCc- -3' miRNA: 3'- -UGUGu-GGGGGGGGGGGGGGGGcGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 6997 | 0.71 | 0.139761 |
Target: 5'- aACuCAgCCCCCCCUCCCCUCaCGaCCAUu -3' miRNA: 3'- -UGuGUgGGGGGGGGGGGGGG-GC-GGUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 6465 | 0.83 | 0.01711 |
Target: 5'- uCAgGCCUCCCCCCCCCCCCaCGCCu- -3' miRNA: 3'- uGUgUGGGGGGGGGGGGGGG-GCGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 6122 | 0.68 | 0.237017 |
Target: 5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3' miRNA: 3'- ugugUGGGGGGGGGGGGGGGGcGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 6083 | 0.68 | 0.237017 |
Target: 5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3' miRNA: 3'- ugugUGGGGGGGGGGGGGGGGcGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 6027 | 0.68 | 0.221674 |
Target: 5'- ----uUCUCCCCCCCCCCUCC-CCAc -3' miRNA: 3'- uguguGGGGGGGGGGGGGGGGcGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 5905 | 0.66 | 0.31392 |
Target: 5'- ----cCCCCCCCCUCCCCUCUuCCu- -3' miRNA: 3'- uguguGGGGGGGGGGGGGGGGcGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 4420 | 0.66 | 0.300955 |
Target: 5'- cACGCGCCCCCCCauaCUcggcgcgcguaCCCgCgGCCAUc -3' miRNA: 3'- -UGUGUGGGGGGGg--GG-----------GGGgGgCGGUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 4068 | 0.71 | 0.146505 |
Target: 5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3' miRNA: 3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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