miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 131803 0.77 0.054203
Target:  5'- ----cCCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGCggua -5'
9640 5' -70.1 NC_002577.1 + 157851 0.67 0.276276
Target:  5'- -aACGCCgCCCUCUgaaUCCCCCCGCgGUc -3'
miRNA:   3'- ugUGUGGgGGGGGG---GGGGGGGCGgUA- -5'
9640 5' -70.1 NC_002577.1 + 135183 0.77 0.052876
Target:  5'- -gACucCCCCCgCCCCCCCCCCCGaCCu- -3'
miRNA:   3'- ugUGu-GGGGG-GGGGGGGGGGGC-GGua -5'
9640 5' -70.1 NC_002577.1 + 131882 0.75 0.069377
Target:  5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3'
miRNA:   3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5'
9640 5' -70.1 NC_002577.1 + 157502 0.74 0.090775
Target:  5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3'
miRNA:   3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 164047 0.72 0.130177
Target:  5'- -aAUAUCCCCCCCugcauuucaCCCCCCCCcCCAa -3'
miRNA:   3'- ugUGUGGGGGGGG---------GGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 8817 0.66 0.300955
Target:  5'- uGCGCguGCCCCUCCCCCaacuaaCCCUUCGCgCGc -3'
miRNA:   3'- -UGUG--UGGGGGGGGGG------GGGGGGCG-GUa -5'
9640 5' -70.1 NC_002577.1 + 83166 0.67 0.288408
Target:  5'- -aGCgACUCgUCCCCUUCCCCCGCUAc -3'
miRNA:   3'- ugUG-UGGGgGGGGGGGGGGGGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 50953 0.66 0.327302
Target:  5'- uCGCGCCCCCCauucgCCCUUCUCCCGagGUa -3'
miRNA:   3'- uGUGUGGGGGG-----GGGGGGGGGGCggUA- -5'
9640 5' -70.1 NC_002577.1 + 9438 0.68 0.242326
Target:  5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3'
miRNA:   3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 3591 0.68 0.231806
Target:  5'- cACGgGCCCUCUCUCgCCCCUCCGCg-- -3'
miRNA:   3'- -UGUgUGGGGGGGGG-GGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 8978 0.68 0.221674
Target:  5'- uACGCACggaCUCCCCCgCCCgCGCCAUc -3'
miRNA:   3'- -UGUGUGgg-GGGGGGGgGGGgGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 75222 0.69 0.193523
Target:  5'- cGCACGCCCUCUCCCCagCUUUCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGGGGGg-GGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 6997 0.71 0.139761
Target:  5'- aACuCAgCCCCCCCUCCCCUCaCGaCCAUu -3'
miRNA:   3'- -UGuGUgGGGGGGGGGGGGGG-GC-GGUA- -5'
9640 5' -70.1 NC_002577.1 + 126168 0.66 0.327302
Target:  5'- aGCAUGCCCUguaCCCCaCCCCCCUuCUAa -3'
miRNA:   3'- -UGUGUGGGGg--GGGG-GGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 129918 0.71 0.133302
Target:  5'- --cCGCCCCCCCCCCCCCacauaggaaCCucuguuccauCGCCAUc -3'
miRNA:   3'- uguGUGGGGGGGGGGGGG---------GG----------GCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 133672 0.72 0.130176
Target:  5'- -aAUAUCCCCCCCugcauuucaCCCCCCCCcCCAa -3'
miRNA:   3'- ugUGUGGGGGGGG---------GGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 140775 0.73 0.100012
Target:  5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3'
miRNA:   3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 124176 0.68 0.242325
Target:  5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3'
miRNA:   3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 127530 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.