miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 154814 0.66 0.320559
Target:  5'- uCACGUCUCCCUUUCCCCCCUGCa-- -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 129194 0.66 0.300955
Target:  5'- cACGCGCCCCCCCauaCUcggcgcgcguaCCCgCgGCCAUc -3'
miRNA:   3'- -UGUGUGGGGGGGg--GG-----------GGGgGgCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 124797 0.66 0.300955
Target:  5'- uGCGCguGCCCCUCCCCCaacuaaCCCUUCGCgCGc -3'
miRNA:   3'- -UGUG--UGGGGGGGGGG------GGGGGGCG-GUa -5'
9640 5' -70.1 NC_002577.1 + 7645 0.71 0.133302
Target:  5'- uGCGCGaaugcgucuuuCCCCCUuccaaggccuaaCCCCCCCCCCGCg-- -3'
miRNA:   3'- -UGUGU-----------GGGGGG------------GGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 140806 0.67 0.270364
Target:  5'- cUACACCaCCUCCCCUuagCCCCCCuCCu- -3'
miRNA:   3'- uGUGUGG-GGGGGGGG---GGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 144146 0.82 0.020417
Target:  5'- uCAUcCCCCCCCCCCCCCCCCcCCGa -3'
miRNA:   3'- uGUGuGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 127149 0.83 0.01711
Target:  5'- uCAgGCCUCCCCCCCCCCCCaCGCCu- -3'
miRNA:   3'- uGUgUGGGGGGGGGGGGGGG-GCGGua -5'
9640 5' -70.1 NC_002577.1 + 162959 0.84 0.013977
Target:  5'- cAC-CACCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGCggua -5'
9640 5' -70.1 NC_002577.1 + 7776 0.86 0.01085
Target:  5'- cGCACGguucggaucccCCCCCCCCCCCCCCCCGCa-- -3'
miRNA:   3'- -UGUGU-----------GGGGGGGGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 155044 0.88 0.007607
Target:  5'- cCGCGCCCCCCCCCCCCCCCCcCCc- -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 163157 0.9 0.005331
Target:  5'- uCGCGCCCCCCCCCCCCCCCC-CCGa -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 131095 0.9 0.004939
Target:  5'- cCACACCCCCCCCCCCCCCCCGaaaaCCGa -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGC----GGUa -5'
9640 5' -70.1 NC_002577.1 + 125307 1.04 0.000451
Target:  5'- cACACACCCCCCCCCCCCCCCCGCCAUc -3'
miRNA:   3'- -UGUGUGGGGGGGGGGGGGGGGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 133672 0.72 0.130176
Target:  5'- -aAUAUCCCCCCCugcauuucaCCCCCCCCcCCAa -3'
miRNA:   3'- ugUGUGGGGGGGG---------GGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 129918 0.71 0.133302
Target:  5'- --cCGCCCCCCCCCCCCCacauaggaaCCucuguuccauCGCCAUc -3'
miRNA:   3'- uguGUGGGGGGGGGGGGG---------GG----------GCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 126616 0.71 0.139761
Target:  5'- aACuCAgCCCCCCCUCCCCUCaCGaCCAUu -3'
miRNA:   3'- -UGuGUgGGGGGGGGGGGGGG-GC-GGUA- -5'
9640 5' -70.1 NC_002577.1 + 129545 0.71 0.146505
Target:  5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3'
miRNA:   3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5'
9640 5' -70.1 NC_002577.1 + 122163 0.7 0.160891
Target:  5'- cACACAUCCUCCCgCCCCCacaaccuccuCCCCGgCGg -3'
miRNA:   3'- -UGUGUGGGGGGG-GGGGG----------GGGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 142554 0.7 0.162397
Target:  5'- -gGC-CCCCCCUCCCCCacgcagcgccuauugCCCCGUCGc -3'
miRNA:   3'- ugUGuGGGGGGGGGGGG---------------GGGGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 122080 0.69 0.184858
Target:  5'- gGC-UACCCUCCCUCCCCCCUCuCCu- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGcGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.