Results 81 - 100 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 9694 | 0.78 | 0.044432 |
Target: 5'- ----uCCCCCCCCCCCCCCCCaaGCCc- -3' miRNA: 3'- uguguGGGGGGGGGGGGGGGG--CGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 126476 | 0.81 | 0.026264 |
Target: 5'- cGCAUcuCCCCCCCCCCCCCCCCuCCc- -3' miRNA: 3'- -UGUGu-GGGGGGGGGGGGGGGGcGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 144146 | 0.82 | 0.020417 |
Target: 5'- uCAUcCCCCCCCCCCCCCCCCcCCGa -3' miRNA: 3'- uGUGuGGGGGGGGGGGGGGGGcGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 127149 | 0.83 | 0.01711 |
Target: 5'- uCAgGCCUCCCCCCCCCCCCaCGCCu- -3' miRNA: 3'- uGUgUGGGGGGGGGGGGGGG-GCGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 162959 | 0.84 | 0.013977 |
Target: 5'- cAC-CACCCCCCCCCCCCCCCCGa--- -3' miRNA: 3'- -UGuGUGGGGGGGGGGGGGGGGCggua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 7776 | 0.86 | 0.01085 |
Target: 5'- cGCACGguucggaucccCCCCCCCCCCCCCCCCGCa-- -3' miRNA: 3'- -UGUGU-----------GGGGGGGGGGGGGGGGCGgua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 155044 | 0.88 | 0.007607 |
Target: 5'- cCGCGCCCCCCCCCCCCCCCCcCCc- -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGcGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 163157 | 0.9 | 0.005331 |
Target: 5'- uCGCGCCCCCCCCCCCCCCCC-CCGa -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGcGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 131095 | 0.9 | 0.004939 |
Target: 5'- cCACACCCCCCCCCCCCCCCCGaaaaCCGa -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGC----GGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 142212 | 0.78 | 0.045553 |
Target: 5'- cAC-CACCaCCCCCCCCCCCCC-CCAa -3' miRNA: 3'- -UGuGUGGgGGGGGGGGGGGGGcGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 132648 | 0.77 | 0.048959 |
Target: 5'- cCGCAUCCCCcccucaaCCCCCCCCCCCcCCGUa -3' miRNA: 3'- uGUGUGGGGG-------GGGGGGGGGGGcGGUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 136923 | 0.73 | 0.1042 |
Target: 5'- uGCACAaggCCCCCCaCCCCCCCUgaagcgugccgcgaCGCCGg -3' miRNA: 3'- -UGUGUg--GGGGGG-GGGGGGGG--------------GCGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 140775 | 0.73 | 0.100012 |
Target: 5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3' miRNA: 3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 124719 | 0.74 | 0.090775 |
Target: 5'- cACGCAUUCCCggucgcccgucgCCCCCCCCCUCGCaCAUc -3' miRNA: 3'- -UGUGUGGGGG------------GGGGGGGGGGGCG-GUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 139836 | 0.74 | 0.090775 |
Target: 5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3' miRNA: 3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 123670 | 0.74 | 0.086465 |
Target: 5'- cCACACCCCUCCaccgaccaugCCCCaCCCCCGCUc- -3' miRNA: 3'- uGUGUGGGGGGG----------GGGG-GGGGGCGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 140909 | 0.75 | 0.071102 |
Target: 5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3' miRNA: 3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 1731 | 0.75 | 0.069376 |
Target: 5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3' miRNA: 3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 140704 | 0.76 | 0.056533 |
Target: 5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3' miRNA: 3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 1810 | 0.77 | 0.054203 |
Target: 5'- ----cCCCCCCCCCCCCCCCCGa--- -3' miRNA: 3'- uguguGGGGGGGGGGGGGGGGCggua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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