Results 61 - 80 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9640 | 5' | -70.1 | NC_002577.1 | + | 4068 | 0.71 | 0.146505 |
Target: 5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3' miRNA: 3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 11451 | 0.7 | 0.160891 |
Target: 5'- cACACAUCCUCCCgCCCCCacaaccuccuCCCCGgCGg -3' miRNA: 3'- -UGUGUGGGGGGG-GGGGG----------GGGGCgGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 154782 | 0.7 | 0.162397 |
Target: 5'- -gGC-CCCCCCUCCCCCacgcagcgccuauugCCCCGUCGc -3' miRNA: 3'- ugUGuGGGGGGGGGGGG---------------GGGGCGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 11534 | 0.69 | 0.184858 |
Target: 5'- gGC-UACCCUCCCUCCCCCCUCuCCu- -3' miRNA: 3'- -UGuGUGGGGGGGGGGGGGGGGcGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 75222 | 0.69 | 0.193523 |
Target: 5'- cGCACGCCCUCUCCCCagCUUUCGCCu- -3' miRNA: 3'- -UGUGUGGGGGGGGGGg-GGGGGCGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 156429 | 0.75 | 0.071102 |
Target: 5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3' miRNA: 3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 131882 | 0.75 | 0.069377 |
Target: 5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3' miRNA: 3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 2519 | 0.9 | 0.004939 |
Target: 5'- cCACACCCCCCCCCCCCCCCCGaaaaCCGa -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGC----GGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 134171 | 0.9 | 0.005331 |
Target: 5'- uCGCGCCCCCCCCCCCCCCCC-CCGa -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGcGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 142295 | 0.88 | 0.007607 |
Target: 5'- cCGCGCCCCCCCCCCCCCCCCcCCc- -3' miRNA: 3'- uGUGUGGGGGGGGGGGGGGGGcGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 125837 | 0.86 | 0.01085 |
Target: 5'- cGCACGguucggaucccCCCCCCCCCCCCCCCCGCa-- -3' miRNA: 3'- -UGUGU-----------GGGGGGGGGGGGGGGGCGgua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 134369 | 0.84 | 0.013977 |
Target: 5'- cAC-CACCCCCCCCCCCCCCCCGa--- -3' miRNA: 3'- -UGuGUGGGGGGGGGGGGGGGGCggua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 6465 | 0.83 | 0.01711 |
Target: 5'- uCAgGCCUCCCCCCCCCCCCaCGCCu- -3' miRNA: 3'- uGUgUGGGGGGGGGGGGGGG-GCGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 7137 | 0.81 | 0.026264 |
Target: 5'- cGCAUcuCCCCCCCCCCCCCCCCuCCc- -3' miRNA: 3'- -UGUGu-GGGGGGGGGGGGGGGGcGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 123919 | 0.78 | 0.044432 |
Target: 5'- ----uCCCCCCCCCCCCCCCCaaGCCc- -3' miRNA: 3'- uguguGGGGGGGGGGGGGGGG--CGGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 155127 | 0.78 | 0.045553 |
Target: 5'- cAC-CACCaCCCCCCCCCCCCC-CCAa -3' miRNA: 3'- -UGuGUGGgGGGGGGGGGGGGGcGGUa -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 962 | 0.78 | 0.046008 |
Target: 5'- -aGCGCCgcaucccccccucaaCCCCCCCCCCCCCCGUgAUu -3' miRNA: 3'- ugUGUGG---------------GGGGGGGGGGGGGGCGgUA- -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 135183 | 0.77 | 0.052876 |
Target: 5'- -gACucCCCCCgCCCCCCCCCCCGaCCu- -3' miRNA: 3'- ugUGu-GGGGG-GGGGGGGGGGGC-GGua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 131803 | 0.77 | 0.054203 |
Target: 5'- ----cCCCCCCCCCCCCCCCCGa--- -3' miRNA: 3'- uguguGGGGGGGGGGGGGGGGCggua -5' |
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9640 | 5' | -70.1 | NC_002577.1 | + | 156634 | 0.76 | 0.056533 |
Target: 5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3' miRNA: 3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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