miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 126037 0.67 0.280475
Target:  5'- cCAUuuaucuuCCCCCCCgcguaaacaauuauCCCUCCCCCGCgCGUc -3'
miRNA:   3'- uGUGu------GGGGGGG--------------GGGGGGGGGCG-GUA- -5'
9640 5' -70.1 NC_002577.1 + 157851 0.67 0.276276
Target:  5'- -aACGCCgCCCUCUgaaUCCCCCCGCgGUc -3'
miRNA:   3'- ugUGUGGgGGGGGG---GGGGGGGCGgUA- -5'
9640 5' -70.1 NC_002577.1 + 139486 0.67 0.276275
Target:  5'- -aACGCCgCCCUCUgaaUCCCCCCGCgGUc -3'
miRNA:   3'- ugUGUGGgGGGGGG---GGGGGGGCGgUA- -5'
9640 5' -70.1 NC_002577.1 + 156532 0.67 0.270364
Target:  5'- cUACACCaCCUCCCCUuagCCCCCCuCCu- -3'
miRNA:   3'- uGUGUGG-GGGGGGGG---GGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 140806 0.67 0.270364
Target:  5'- cUACACCaCCUCCCCUuagCCCCCCuCCu- -3'
miRNA:   3'- uGUGUGG-GGGGGGGG---GGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 8656 0.67 0.269778
Target:  5'- cACACACCCCCacacacaCCCCCacacaCCCCCacacacaccgcgGCUAc -3'
miRNA:   3'- -UGUGUGGGGG-------GGGGGg----GGGGG------------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 124957 0.67 0.269778
Target:  5'- cACACACCCCCacacacaCCCCCacacaCCCCCacacacaccgcgGCUAc -3'
miRNA:   3'- -UGUGUGGGGG-------GGGGGg----GGGGG------------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 9438 0.68 0.242326
Target:  5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3'
miRNA:   3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 124176 0.68 0.242325
Target:  5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3'
miRNA:   3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 127530 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 127491 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 6083 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 6122 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 130023 0.68 0.231806
Target:  5'- cACGgGCCCUCUCUCgCCCCUCCGCg-- -3'
miRNA:   3'- -UGUgUGGGGGGGGG-GGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 3591 0.68 0.231806
Target:  5'- cACGgGCCCUCUCUCgCCCCUCCGCg-- -3'
miRNA:   3'- -UGUgUGGGGGGGGG-GGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 158439 0.68 0.226692
Target:  5'- -aGCGCCCauguuUCCCCCCCUUCCCGuuCCAg -3'
miRNA:   3'- ugUGUGGG-----GGGGGGGGGGGGGC--GGUa -5'
9640 5' -70.1 NC_002577.1 + 122889 0.68 0.226692
Target:  5'- gGguCGCCCCCCgacuuuCCCCCCggCCCCGCa-- -3'
miRNA:   3'- -UguGUGGGGGG------GGGGGG--GGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 138899 0.68 0.226692
Target:  5'- -aGCGCCCauguuUCCCCCCCUUCCCGuuCCAg -3'
miRNA:   3'- ugUGUGGG-----GGGGGGGGGGGGGC--GGUa -5'
9640 5' -70.1 NC_002577.1 + 10724 0.68 0.226692
Target:  5'- gGguCGCCCCCCgacuuuCCCCCCggCCCCGCa-- -3'
miRNA:   3'- -UguGUGGGGGG------GGGGGG--GGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 127586 0.68 0.221674
Target:  5'- ----uUCUCCCCCCCCCCUCC-CCAc -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGcGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.