miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9641 3' -53.3 NC_002577.1 + 58269 0.66 0.981949
Target:  5'- uUCUUgagAAGCGUUCGGAGGuaCCGauccagACGg -3'
miRNA:   3'- gAGAGa--UUCGCAGGCUUCC--GGCa-----UGC- -5'
9641 3' -53.3 NC_002577.1 + 136662 0.66 0.979163
Target:  5'- -aCUCUGuggcgucagccguuGGCGcguucUCCGGAGGCCaugGCGg -3'
miRNA:   3'- gaGAGAU--------------UCGC-----AGGCUUCCGGca-UGC- -5'
9641 3' -53.3 NC_002577.1 + 137554 0.66 0.977537
Target:  5'- -cCUCUAGcGCGgaaUUGAAGGCCGcgACGc -3'
miRNA:   3'- gaGAGAUU-CGCa--GGCUUCCGGCa-UGC- -5'
9641 3' -53.3 NC_002577.1 + 159784 0.66 0.977537
Target:  5'- -cCUCUAGcGCGgaaUUGAAGGCCGcgACGc -3'
miRNA:   3'- gaGAGAUU-CGCa--GGCUUCCGGCa-UGC- -5'
9641 3' -53.3 NC_002577.1 + 77818 0.66 0.972378
Target:  5'- -aCUCgagAAGCGgcUCCGAGGGCUGc--- -3'
miRNA:   3'- gaGAGa--UUCGC--AGGCUUCCGGCaugc -5'
9641 3' -53.3 NC_002577.1 + 87226 0.67 0.95585
Target:  5'- aUCggCUAGGCGggcaUgGggGGCUGUACa -3'
miRNA:   3'- gAGa-GAUUCGCa---GgCuuCCGGCAUGc -5'
9641 3' -53.3 NC_002577.1 + 9471 0.68 0.938549
Target:  5'- gUCUgugGAGUuugguUUCGAGGGCCGUGCGg -3'
miRNA:   3'- gAGAga-UUCGc----AGGCUUCCGGCAUGC- -5'
9641 3' -53.3 NC_002577.1 + 124143 0.68 0.938549
Target:  5'- gUCUgugGAGUuugguUUCGAGGGCCGUGCGg -3'
miRNA:   3'- gAGAga-UUCGc----AGGCUUCCGGCAUGC- -5'
9641 3' -53.3 NC_002577.1 + 160987 0.69 0.892431
Target:  5'- -gCUCUGAGagagaCGAcGGCCGUGCGg -3'
miRNA:   3'- gaGAGAUUCgcag-GCUuCCGGCAUGC- -5'
9641 3' -53.3 NC_002577.1 + 136351 0.69 0.892431
Target:  5'- -gCUCUGAGagagaCGAcGGCCGUGCGg -3'
miRNA:   3'- gaGAGAUUCgcag-GCUuCCGGCAUGC- -5'
9641 3' -53.3 NC_002577.1 + 11856 0.72 0.796736
Target:  5'- cCUCUC--GGCGUCCgGAGGGgCGcGCGg -3'
miRNA:   3'- -GAGAGauUCGCAGG-CUUCCgGCaUGC- -5'
9641 3' -53.3 NC_002577.1 + 121757 0.72 0.796736
Target:  5'- cCUCUC--GGCGUCCgGAGGGgCGcGCGg -3'
miRNA:   3'- -GAGAGauUCGCAGG-CUUCCgGCaUGC- -5'
9641 3' -53.3 NC_002577.1 + 89676 0.72 0.75935
Target:  5'- gCUCUC---GCGUCCGAGGuGuuGUGCa -3'
miRNA:   3'- -GAGAGauuCGCAGGCUUC-CggCAUGc -5'
9641 3' -53.3 NC_002577.1 + 160182 0.73 0.710122
Target:  5'- cCUCUUccgGAaCGUCCGAGGGCCGgucGCGc -3'
miRNA:   3'- -GAGAGa--UUcGCAGGCUUCCGGCa--UGC- -5'
9641 3' -53.3 NC_002577.1 + 137156 0.73 0.710122
Target:  5'- cCUCUUccgGAaCGUCCGAGGGCCGgucGCGc -3'
miRNA:   3'- -GAGAGa--UUcGCAGGCUUCCGGCa--UGC- -5'
9641 3' -53.3 NC_002577.1 + 8151 1.1 0.005249
Target:  5'- gCUCUCUAAGCGUCCGAAGGCCGUACGg -3'
miRNA:   3'- -GAGAGAUUCGCAGGCUUCCGGCAUGC- -5'
9641 3' -53.3 NC_002577.1 + 125462 1.1 0.005249
Target:  5'- gCUCUCUAAGCGUCCGAAGGCCGUACGg -3'
miRNA:   3'- -GAGAGAUUCGCAGGCUUCCGGCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.