miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9642 3' -56 NC_002577.1 + 52950 0.66 0.927354
Target:  5'- cGCUCUGUUCCUGGccGAUAGGcGCUUCa -3'
miRNA:   3'- -UGGGGCGAGGACC--CUGUUUaUGAGGc -5'
9642 3' -56 NC_002577.1 + 154709 0.66 0.91048
Target:  5'- cACCgCGCUCCUGG--UAGGUGCUgUCGg -3'
miRNA:   3'- -UGGgGCGAGGACCcuGUUUAUGA-GGC- -5'
9642 3' -56 NC_002577.1 + 142627 0.66 0.91048
Target:  5'- cACCgCGCUCCUGG--UAGGUGCUgUCGg -3'
miRNA:   3'- -UGGgGCGAGGACCcuGUUUAUGA-GGC- -5'
9642 3' -56 NC_002577.1 + 153768 0.66 0.91048
Target:  5'- gGCCCCGUuugCCUaaacGGGGCA---GCUUCGc -3'
miRNA:   3'- -UGGGGCGa--GGA----CCCUGUuuaUGAGGC- -5'
9642 3' -56 NC_002577.1 + 157803 0.67 0.891508
Target:  5'- cGCgCCGCcgCC-GGGcGCGGGUACUCCc -3'
miRNA:   3'- -UGgGGCGa-GGaCCC-UGUUUAUGAGGc -5'
9642 3' -56 NC_002577.1 + 139534 0.67 0.891508
Target:  5'- cGCgCCGCcgCC-GGGcGCGGGUACUCCc -3'
miRNA:   3'- -UGgGGCGa-GGaCCC-UGUUUAUGAGGc -5'
9642 3' -56 NC_002577.1 + 128508 0.68 0.814416
Target:  5'- gUgCCGCUCCccgucgugUGGGACAAGguugggaggGCUCUGg -3'
miRNA:   3'- uGgGGCGAGG--------ACCCUGUUUa--------UGAGGC- -5'
9642 3' -56 NC_002577.1 + 5106 0.68 0.814416
Target:  5'- gUgCCGCUCCccgucgugUGGGACAAGguugggaggGCUCUGg -3'
miRNA:   3'- uGgGGCGAGG--------ACCCUGUUUa--------UGAGGC- -5'
9642 3' -56 NC_002577.1 + 157501 0.69 0.796804
Target:  5'- -aCCgGCUCCUGGGGCAGcggGCgaCCu -3'
miRNA:   3'- ugGGgCGAGGACCCUGUUua-UGa-GGc -5'
9642 3' -56 NC_002577.1 + 156466 0.69 0.796804
Target:  5'- cGCCCCGUUCCgaacccgcgGGGACuAGAUcg-CCGa -3'
miRNA:   3'- -UGGGGCGAGGa--------CCCUG-UUUAugaGGC- -5'
9642 3' -56 NC_002577.1 + 139836 0.69 0.796804
Target:  5'- -aCCgGCUCCUGGGGCAGcggGCgaCCu -3'
miRNA:   3'- ugGGgCGAGGACCCUGUUua-UGa-GGc -5'
9642 3' -56 NC_002577.1 + 140871 0.69 0.796804
Target:  5'- cGCCCCGUUCCgaacccgcgGGGACuAGAUcg-CCGa -3'
miRNA:   3'- -UGGGGCGAGGa--------CCCUG-UUUAugaGGC- -5'
9642 3' -56 NC_002577.1 + 162032 0.71 0.650865
Target:  5'- cGCCCUGUUCCUccuGGACGGugguCUCCGg -3'
miRNA:   3'- -UGGGGCGAGGAc--CCUGUUuau-GAGGC- -5'
9642 3' -56 NC_002577.1 + 135306 0.71 0.650865
Target:  5'- cGCCCUGUUCCUccuGGACGGugguCUCCGg -3'
miRNA:   3'- -UGGGGCGAGGAc--CCUGUUuau-GAGGC- -5'
9642 3' -56 NC_002577.1 + 11223 0.72 0.640695
Target:  5'- cGCCCCcCUCCcacgGGGGCGGAUucggggacCUCCGg -3'
miRNA:   3'- -UGGGGcGAGGa---CCCUGUUUAu-------GAGGC- -5'
9642 3' -56 NC_002577.1 + 122391 0.72 0.640695
Target:  5'- cGCCCCcCUCCcacgGGGGCGGAUucggggacCUCCGg -3'
miRNA:   3'- -UGGGGcGAGGa---CCCUGUUUAu-------GAGGC- -5'
9642 3' -56 NC_002577.1 + 160031 0.73 0.570741
Target:  5'- gACCCCGCUcggccuuggcgaugcCCUGGGuCGAgggacauuacuuccGUGCUCCu -3'
miRNA:   3'- -UGGGGCGA---------------GGACCCuGUU--------------UAUGAGGc -5'
9642 3' -56 NC_002577.1 + 137307 0.73 0.570741
Target:  5'- gACCCCGCUcggccuuggcgaugcCCUGGGuCGAgggacauuacuuccGUGCUCCu -3'
miRNA:   3'- -UGGGGCGA---------------GGACCCuGUU--------------UAUGAGGc -5'
9642 3' -56 NC_002577.1 + 126413 1.09 0.00298
Target:  5'- gACCCCGCUCCUGGGACAAAUACUCCGg -3'
miRNA:   3'- -UGGGGCGAGGACCCUGUUUAUGAGGC- -5'
9642 3' -56 NC_002577.1 + 7200 1.09 0.00298
Target:  5'- gACCCCGCUCCUGGGACAAAUACUCCGg -3'
miRNA:   3'- -UGGGGCGAGGACCCUGUUUAUGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.