Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9642 | 5' | -45.5 | NC_002577.1 | + | 127370 | 0.69 | 0.999082 |
Target: 5'- -aCGGAGGUggg---AGAAGGGGGa- -3' miRNA: 3'- uaGCCUUUAaauaaaUCUUCCCCCca -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 127434 | 0.69 | 0.999157 |
Target: 5'- --gGGAAGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 6180 | 0.69 | 0.999157 |
Target: 5'- --gGGAAGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 126279 | 0.69 | 0.999192 |
Target: 5'- -aUGGggGggggaggGGggGGGGGGg -3' miRNA: 3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 7335 | 0.69 | 0.999192 |
Target: 5'- -aUGGggGggggaggGGggGGGGGGg -3' miRNA: 3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 104939 | 0.69 | 0.999259 |
Target: 5'- --aGGAAGaucAUcUAGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaaUAaAUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 124512 | 0.69 | 0.999259 |
Target: 5'- -gCGGGA---UGUgcgAGggGGGGGGc -3' miRNA: 3'- uaGCCUUuaaAUAaa-UCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 9102 | 0.69 | 0.999259 |
Target: 5'- -gCGGGA---UGUgcgAGggGGGGGGc -3' miRNA: 3'- uaGCCUUuaaAUAaa-UCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 158655 | 0.69 | 0.999322 |
Target: 5'- cUCGGAGAcggcccguuccagucUggaacgGGAAGGGGGGg -3' miRNA: 3'- uAGCCUUU---------------AaauaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 3890 | 0.69 | 0.999406 |
Target: 5'- -aCaGAGGUUccUAUgUGGggGGGGGGg -3' miRNA: 3'- uaGcCUUUAA--AUAaAUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 129724 | 0.69 | 0.999406 |
Target: 5'- -aCaGAGGUUccUAUgUGGggGGGGGGg -3' miRNA: 3'- uaGcCUUUAA--AUAaAUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 156824 | 0.69 | 0.999406 |
Target: 5'- --gGGGAAcc-GUgcGGAGGGGGGGUa -3' miRNA: 3'- uagCCUUUaaaUAaaUCUUCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 140514 | 0.69 | 0.999406 |
Target: 5'- --gGGGAAcc-GUgcGGAGGGGGGGUa -3' miRNA: 3'- uagCCUUUaaaUAaaUCUUCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 132444 | 0.69 | 0.999493 |
Target: 5'- -aUGGAAucuacggggGGggGGGGGGUu -3' miRNA: 3'- uaGCCUUuaaauaaa-UCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 1170 | 0.69 | 0.999493 |
Target: 5'- -aUGGAAucuacggggGGggGGGGGGUu -3' miRNA: 3'- uaGCCUUuaaauaaa-UCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 138683 | 0.69 | 0.999569 |
Target: 5'- cUCGGAGAcggcccguuccagucUggaacgGGAAGGGGGGa -3' miRNA: 3'- uAGCCUUU---------------AaauaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 6128 | 0.69 | 0.99966 |
Target: 5'- --gGGAGGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 127486 | 0.69 | 0.99966 |
Target: 5'- --gGGAGGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 6154 | 0.69 | 0.99966 |
Target: 5'- --gGGAGGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 127460 | 0.69 | 0.99966 |
Target: 5'- --gGGAGGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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