Results 61 - 74 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9642 | 5' | -45.5 | NC_002577.1 | + | 142023 | 0.68 | 0.999699 |
Target: 5'- uUUGGggG-------GGggGGGGGGUg -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 155315 | 0.68 | 0.999699 |
Target: 5'- uUUGGggG-------GGggGGGGGGUg -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 154244 | 0.68 | 0.999707 |
Target: 5'- uUCGGGAuuagUAg--GGAugAGGGGGGa -3' miRNA: 3'- uAGCCUUuaa-AUaaaUCU--UCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 9512 | 0.68 | 0.999771 |
Target: 5'- cUUGGggGg------GGggGGGGGGa -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 124102 | 0.68 | 0.999771 |
Target: 5'- cUUGGggGg------GGggGGGGGGa -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 140700 | 0.68 | 0.999771 |
Target: 5'- cAUgGGAAGUUcacgauagUUcGggGGGGGGUg -3' miRNA: 3'- -UAgCCUUUAAaua-----AAuCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 156638 | 0.68 | 0.999864 |
Target: 5'- cAUgGGAAGUUcacgaUAggUUcGggGGGGGGUg -3' miRNA: 3'- -UAgCCUUUAA-----AUa-AAuCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 43496 | 0.67 | 0.999891 |
Target: 5'- cAUCGGcuucgggGUUUAuAAGGGGGGg -3' miRNA: 3'- -UAGCCuuuaaa-UAAAUcUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 126178 | 0.67 | 0.999897 |
Target: 5'- -gCGGggGgggggUUAggccUUGGAAGGGGGa- -3' miRNA: 3'- uaGCCuuUa----AAUa---AAUCUUCCCCCca -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 7436 | 0.67 | 0.999897 |
Target: 5'- -gCGGggGgggggUUAggccUUGGAAGGGGGa- -3' miRNA: 3'- uaGCCuuUa----AAUa---AAUCUUCCCCCca -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 126419 | 0.67 | 0.999922 |
Target: 5'- --aGGAAAauggUcgUgagGGGAGGGGGGg -3' miRNA: 3'- uagCCUUUaa--AuaAa--UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 7195 | 0.67 | 0.999922 |
Target: 5'- --aGGAAAauggUcgUgagGGGAGGGGGGg -3' miRNA: 3'- uagCCUUUaa--AuaAa--UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 6066 | 0.66 | 0.999982 |
Target: 5'- --aGGGAGgaagaa-GGGAGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 127548 | 0.66 | 0.999982 |
Target: 5'- --aGGGAGgaagaa-GGGAGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaaUCUUCCCCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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