miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9642 5' -45.5 NC_002577.1 + 127398 0.72 0.993368
Target:  5'- --aGGGAGUggGg--AGggGGGGGGg -3'
miRNA:   3'- uagCCUUUAaaUaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127434 0.69 0.999157
Target:  5'- --gGGAAGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127460 0.69 0.99966
Target:  5'- --gGGAGGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127486 0.69 0.99966
Target:  5'- --gGGAGGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127522 0.7 0.998503
Target:  5'- --aGGGAGgaagaggGGAGGGGGGGg -3'
miRNA:   3'- uagCCUUUaaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127548 0.66 0.999982
Target:  5'- --aGGGAGgaagaa-GGGAGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 129724 0.69 0.999406
Target:  5'- -aCaGAGGUUccUAUgUGGggGGGGGGg -3'
miRNA:   3'- uaGcCUUUAA--AUAaAUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 130908 0.76 0.945615
Target:  5'- uUCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 131986 0.75 0.966519
Target:  5'- cUCGGggGgggggggggGGGAGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 132444 0.69 0.999493
Target:  5'- -aUGGAAucuacggggGGggGGGGGGUu -3'
miRNA:   3'- uaGCCUUuaaauaaa-UCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 134359 0.74 0.980529
Target:  5'- cUCGGggGgg-----GGggGGGGGGg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 134556 0.77 0.911865
Target:  5'- aAUCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- -UAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 135371 0.69 0.999082
Target:  5'- gGUCGGggGggg----GGgcGGGGGGa -3'
miRNA:   3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 138683 0.69 0.999569
Target:  5'- cUCGGAGAcggcccguuccagucUggaacgGGAAGGGGGGa -3'
miRNA:   3'- uAGCCUUU---------------AaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 140514 0.69 0.999406
Target:  5'- --gGGGAAcc-GUgcGGAGGGGGGGUa -3'
miRNA:   3'- uagCCUUUaaaUAaaUCUUCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 140539 0.75 0.958743
Target:  5'- -gCGGAGGUggcgUAgg-AGGAGGGGGGc -3'
miRNA:   3'- uaGCCUUUAa---AUaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 140570 0.71 0.997073
Target:  5'- --gGGAGGUggcgUAgg-AGGAGGGGGGc -3'
miRNA:   3'- uagCCUUUAa---AUaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 140600 0.7 0.998617
Target:  5'- --gGGggGUggcgUAgg-AGGAGGGGGGc -3'
miRNA:   3'- uagCCuuUAa---AUaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 140700 0.68 0.999771
Target:  5'- cAUgGGAAGUUcacgauagUUcGggGGGGGGUg -3'
miRNA:   3'- -UAgCCUUUAAaua-----AAuCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 142023 0.68 0.999699
Target:  5'- uUUGGggG-------GGggGGGGGGUg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.