Results 61 - 74 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9642 | 5' | -45.5 | NC_002577.1 | + | 142486 | 0.76 | 0.945615 |
Target: 5'- uAUCGGggGgggg---GGggGGGGGGg -3' miRNA: 3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 143538 | 0.75 | 0.957943 |
Target: 5'- cGUCGGGGcuggg---GGAGGGGGGGUa -3' miRNA: 3'- -UAGCCUUuaaauaaaUCUUCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 143955 | 0.76 | 0.940692 |
Target: 5'- aAUCGGggGggggg--GGggGGGGGGa -3' miRNA: 3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 154244 | 0.68 | 0.999707 |
Target: 5'- uUCGGGAuuagUAg--GGAugAGGGGGGa -3' miRNA: 3'- uAGCCUUuaa-AUaaaUCU--UCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 154850 | 0.77 | 0.923054 |
Target: 5'- uAUCGGggGgggggg-GGggGGGGGGg -3' miRNA: 3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 155315 | 0.68 | 0.999699 |
Target: 5'- uUUGGggG-------GGggGGGGGGUg -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 156638 | 0.68 | 0.999864 |
Target: 5'- cAUgGGAAGUUcacgaUAggUUcGggGGGGGGUg -3' miRNA: 3'- -UAgCCUUUAA-----AUa-AAuCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 156738 | 0.7 | 0.998617 |
Target: 5'- --gGGggGUggcgUAgg-AGGAGGGGGGc -3' miRNA: 3'- uagCCuuUAa---AUaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 156768 | 0.71 | 0.997073 |
Target: 5'- --gGGAGGUggcgUAgg-AGGAGGGGGGc -3' miRNA: 3'- uagCCUUUAa---AUaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 156799 | 0.75 | 0.958743 |
Target: 5'- -gCGGAGGUggcgUAgg-AGGAGGGGGGc -3' miRNA: 3'- uaGCCUUUAa---AUaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 156824 | 0.69 | 0.999406 |
Target: 5'- --gGGGAAcc-GUgcGGAGGGGGGGUa -3' miRNA: 3'- uagCCUUUaaaUAaaUCUUCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 158655 | 0.69 | 0.999322 |
Target: 5'- cUCGGAGAcggcccguuccagucUggaacgGGAAGGGGGGg -3' miRNA: 3'- uAGCCUUU---------------AaauaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 162771 | 0.77 | 0.911865 |
Target: 5'- aAUCGGggGg------GGggGGGGGGUg -3' miRNA: 3'- -UAGCCuuUaaauaaaUCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 162968 | 0.74 | 0.980529 |
Target: 5'- cUCGGggGgg-----GGggGGGGGGg -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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