miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9642 5' -45.5 NC_002577.1 + 127331 0.71 0.997274
Target:  5'- -aCGGAGGggggagaaGGGAGGGGGGa -3'
miRNA:   3'- uaGCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 1628 0.75 0.966519
Target:  5'- cUCGGggGgggggggggGGGAGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 7436 0.67 0.999897
Target:  5'- -gCGGggGgggggUUAggccUUGGAAGGGGGa- -3'
miRNA:   3'- uaGCCuuUa----AAUa---AAUCUUCCCCCca -5'
9642 5' -45.5 NC_002577.1 + 138683 0.69 0.999569
Target:  5'- cUCGGAGAcggcccguuccagucUggaacgGGAAGGGGGGa -3'
miRNA:   3'- uAGCCUUU---------------AaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 140600 0.7 0.998617
Target:  5'- --gGGggGUggcgUAgg-AGGAGGGGGGc -3'
miRNA:   3'- uagCCuuUAa---AUaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 140539 0.75 0.958743
Target:  5'- -gCGGAGGUggcgUAgg-AGGAGGGGGGc -3'
miRNA:   3'- uaGCCUUUAa---AUaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 132444 0.69 0.999493
Target:  5'- -aUGGAAucuacggggGGggGGGGGGUu -3'
miRNA:   3'- uaGCCUUuaaauaaa-UCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 143538 0.75 0.957943
Target:  5'- cGUCGGGGcuggg---GGAGGGGGGGUa -3'
miRNA:   3'- -UAGCCUUuaaauaaaUCUUCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 130908 0.76 0.945615
Target:  5'- uUCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 127370 0.69 0.999082
Target:  5'- -aCGGAGGUggg---AGAAGGGGGa- -3'
miRNA:   3'- uaGCCUUUAaauaaaUCUUCCCCCca -5'
9642 5' -45.5 NC_002577.1 + 126419 0.67 0.999922
Target:  5'- --aGGAAAauggUcgUgagGGGAGGGGGGg -3'
miRNA:   3'- uagCCUUUaa--AuaAa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 126953 0.7 0.997965
Target:  5'- aGUCGaGAGGcgUGg--GGggGGGGGGa -3'
miRNA:   3'- -UAGC-CUUUaaAUaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 124512 0.69 0.999259
Target:  5'- -gCGGGA---UGUgcgAGggGGGGGGc -3'
miRNA:   3'- uaGCCUUuaaAUAaa-UCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127460 0.69 0.99966
Target:  5'- --gGGAGGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 9512 0.68 0.999771
Target:  5'- cUUGGggGg------GGggGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 125120 0.72 0.994314
Target:  5'- -gCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- uaGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 162968 0.74 0.980529
Target:  5'- cUCGGggGgg-----GGggGGGGGGg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 104939 0.69 0.999259
Target:  5'- --aGGAAGaucAUcUAGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaaUAaAUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 134359 0.74 0.980529
Target:  5'- cUCGGggGgg-----GGggGGGGGGg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 11756 0.73 0.988879
Target:  5'- gGUCGGAcggGAgaagaaggGGGAGGGGGGg -3'
miRNA:   3'- -UAGCCU---UUaaauaaa-UCUUCCCCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.