Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9642 | 5' | -45.5 | NC_002577.1 | + | 6066 | 0.66 | 0.999982 |
Target: 5'- --aGGGAGgaagaa-GGGAGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 7195 | 0.67 | 0.999922 |
Target: 5'- --aGGAAAauggUcgUgagGGGAGGGGGGg -3' miRNA: 3'- uagCCUUUaa--AuaAa--UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 126178 | 0.67 | 0.999897 |
Target: 5'- -gCGGggGgggggUUAggccUUGGAAGGGGGa- -3' miRNA: 3'- uaGCCuuUa----AAUa---AAUCUUCCCCCca -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 156638 | 0.68 | 0.999864 |
Target: 5'- cAUgGGAAGUUcacgaUAggUUcGggGGGGGGUg -3' miRNA: 3'- -UAgCCUUUAA-----AUa-AAuCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 124102 | 0.68 | 0.999771 |
Target: 5'- cUUGGggGg------GGggGGGGGGa -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 154244 | 0.68 | 0.999707 |
Target: 5'- uUCGGGAuuagUAg--GGAugAGGGGGGa -3' miRNA: 3'- uAGCCUUuaa-AUaaaUCU--UCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 155315 | 0.68 | 0.999699 |
Target: 5'- uUUGGggG-------GGggGGGGGGUg -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 6128 | 0.69 | 0.99966 |
Target: 5'- --gGGAGGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 6154 | 0.69 | 0.99966 |
Target: 5'- --gGGAGGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 1170 | 0.69 | 0.999493 |
Target: 5'- -aUGGAAucuacggggGGggGGGGGGUu -3' miRNA: 3'- uaGCCUUuaaauaaa-UCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 6180 | 0.69 | 0.999157 |
Target: 5'- --gGGAAGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 7335 | 0.69 | 0.999192 |
Target: 5'- -aUGGggGggggaggGGggGGGGGGg -3' miRNA: 3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 104939 | 0.69 | 0.999259 |
Target: 5'- --aGGAAGaucAUcUAGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaaUAaAUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 9102 | 0.69 | 0.999259 |
Target: 5'- -gCGGGA---UGUgcgAGggGGGGGGc -3' miRNA: 3'- uaGCCUUuaaAUAaa-UCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 158655 | 0.69 | 0.999322 |
Target: 5'- cUCGGAGAcggcccguuccagucUggaacgGGAAGGGGGGg -3' miRNA: 3'- uAGCCUUU---------------AaauaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 156824 | 0.69 | 0.999406 |
Target: 5'- --gGGGAAcc-GUgcGGAGGGGGGGUa -3' miRNA: 3'- uagCCUUUaaaUAaaUCUUCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 3890 | 0.69 | 0.999406 |
Target: 5'- -aCaGAGGUUccUAUgUGGggGGGGGGg -3' miRNA: 3'- uaGcCUUUAA--AUAaAUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 127548 | 0.66 | 0.999982 |
Target: 5'- --aGGGAGgaagaa-GGGAGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 162771 | 0.77 | 0.911865 |
Target: 5'- aAUCGGggGg------GGggGGGGGGUg -3' miRNA: 3'- -UAGCCuuUaaauaaaUCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 154850 | 0.77 | 0.923054 |
Target: 5'- uAUCGGggGgggggg-GGggGGGGGGg -3' miRNA: 3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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