Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9642 | 5' | -45.5 | NC_002577.1 | + | 80830 | 0.7 | 0.997965 |
Target: 5'- gGUCGGcAAUUUAcgUUGGAuGuGGGGGUc -3' miRNA: 3'- -UAGCCuUUAAAUa-AAUCUuC-CCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 7579 | 0.7 | 0.998317 |
Target: 5'- -gCGGggGggg----GGggGGGGGGg -3' miRNA: 3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 127522 | 0.7 | 0.998503 |
Target: 5'- --aGGGAGgaagaggGGAGGGGGGGg -3' miRNA: 3'- uagCCUUUaaauaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 140600 | 0.7 | 0.998617 |
Target: 5'- --gGGggGUggcgUAgg-AGGAGGGGGGc -3' miRNA: 3'- uagCCuuUAa---AUaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 127370 | 0.69 | 0.999082 |
Target: 5'- -aCGGAGGUggg---AGAAGGGGGa- -3' miRNA: 3'- uaGCCUUUAaauaaaUCUUCCCCCca -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 127434 | 0.69 | 0.999157 |
Target: 5'- --gGGAAGgggggaagGGAGGGGGGGa -3' miRNA: 3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 126279 | 0.69 | 0.999192 |
Target: 5'- -aUGGggGggggaggGGggGGGGGGg -3' miRNA: 3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 124512 | 0.69 | 0.999259 |
Target: 5'- -gCGGGA---UGUgcgAGggGGGGGGc -3' miRNA: 3'- uaGCCUUuaaAUAaa-UCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 140570 | 0.71 | 0.997073 |
Target: 5'- --gGGAGGUggcgUAgg-AGGAGGGGGGc -3' miRNA: 3'- uagCCUUUAa---AUaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 125120 | 0.72 | 0.994314 |
Target: 5'- -gCGGggGg------GGggGGGGGGUg -3' miRNA: 3'- uaGCCuuUaaauaaaUCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 162771 | 0.77 | 0.911865 |
Target: 5'- aAUCGGggGg------GGggGGGGGGUg -3' miRNA: 3'- -UAGCCuuUaaauaaaUCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 154850 | 0.77 | 0.923054 |
Target: 5'- uAUCGGggGgggggg-GGggGGGGGGg -3' miRNA: 3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 143955 | 0.76 | 0.940692 |
Target: 5'- aAUCGGggGggggg--GGggGGGGGGa -3' miRNA: 3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 130908 | 0.76 | 0.945615 |
Target: 5'- uUCGGggGg------GGggGGGGGGUg -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 143538 | 0.75 | 0.957943 |
Target: 5'- cGUCGGGGcuggg---GGAGGGGGGGUa -3' miRNA: 3'- -UAGCCUUuaaauaaaUCUUCCCCCCA- -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 140539 | 0.75 | 0.958743 |
Target: 5'- -gCGGAGGUggcgUAgg-AGGAGGGGGGc -3' miRNA: 3'- uaGCCUUUAa---AUaaaUCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 1628 | 0.75 | 0.966519 |
Target: 5'- cUCGGggGgggggggggGGGAGGGGGGa -3' miRNA: 3'- uAGCCuuUaaauaaa--UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 162968 | 0.74 | 0.980529 |
Target: 5'- cUCGGggGgg-----GGggGGGGGGg -3' miRNA: 3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 121857 | 0.73 | 0.988879 |
Target: 5'- gGUCGGAcggGAgaagaaggGGGAGGGGGGg -3' miRNA: 3'- -UAGCCU---UUaaauaaa-UCUUCCCCCCa -5' |
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9642 | 5' | -45.5 | NC_002577.1 | + | 127398 | 0.72 | 0.993368 |
Target: 5'- --aGGGAGUggGg--AGggGGGGGGg -3' miRNA: 3'- uagCCUUUAaaUaaaUCuuCCCCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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