miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9642 5' -45.5 NC_002577.1 + 1170 0.69 0.999493
Target:  5'- -aUGGAAucuacggggGGggGGGGGGUu -3'
miRNA:   3'- uaGCCUUuaaauaaa-UCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 140514 0.69 0.999406
Target:  5'- --gGGGAAcc-GUgcGGAGGGGGGGUa -3'
miRNA:   3'- uagCCUUUaaaUAaaUCUUCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 129724 0.69 0.999406
Target:  5'- -aCaGAGGUUccUAUgUGGggGGGGGGg -3'
miRNA:   3'- uaGcCUUUAA--AUAaAUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 3890 0.69 0.999406
Target:  5'- -aCaGAGGUUccUAUgUGGggGGGGGGg -3'
miRNA:   3'- uaGcCUUUAA--AUAaAUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 156824 0.69 0.999406
Target:  5'- --gGGGAAcc-GUgcGGAGGGGGGGUa -3'
miRNA:   3'- uagCCUUUaaaUAaaUCUUCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 158655 0.69 0.999322
Target:  5'- cUCGGAGAcggcccguuccagucUggaacgGGAAGGGGGGg -3'
miRNA:   3'- uAGCCUUU---------------AaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 9102 0.69 0.999259
Target:  5'- -gCGGGA---UGUgcgAGggGGGGGGc -3'
miRNA:   3'- uaGCCUUuaaAUAaa-UCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 124512 0.69 0.999259
Target:  5'- -gCGGGA---UGUgcgAGggGGGGGGc -3'
miRNA:   3'- uaGCCUUuaaAUAaa-UCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 104939 0.69 0.999259
Target:  5'- --aGGAAGaucAUcUAGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaaUAaAUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 126279 0.69 0.999192
Target:  5'- -aUGGggGggggaggGGggGGGGGGg -3'
miRNA:   3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 7335 0.69 0.999192
Target:  5'- -aUGGggGggggaggGGggGGGGGGg -3'
miRNA:   3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127434 0.69 0.999157
Target:  5'- --gGGAAGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6180 0.69 0.999157
Target:  5'- --gGGAAGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 135371 0.69 0.999082
Target:  5'- gGUCGGggGggg----GGgcGGGGGGa -3'
miRNA:   3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127370 0.69 0.999082
Target:  5'- -aCGGAGGUggg---AGAAGGGGGa- -3'
miRNA:   3'- uaGCCUUUAaauaaaUCUUCCCCCca -5'
9642 5' -45.5 NC_002577.1 + 6244 0.69 0.999082
Target:  5'- -aCGGAGGUggg---AGAAGGGGGa- -3'
miRNA:   3'- uaGCCUUUAaauaaaUCUUCCCCCca -5'
9642 5' -45.5 NC_002577.1 + 156738 0.7 0.998617
Target:  5'- --gGGggGUggcgUAgg-AGGAGGGGGGc -3'
miRNA:   3'- uagCCuuUAa---AUaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 140600 0.7 0.998617
Target:  5'- --gGGggGUggcgUAgg-AGGAGGGGGGc -3'
miRNA:   3'- uagCCuuUAa---AUaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6092 0.7 0.998503
Target:  5'- --aGGGAGgaagaggGGAGGGGGGGg -3'
miRNA:   3'- uagCCUUUaaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127522 0.7 0.998503
Target:  5'- --aGGGAGgaagaggGGAGGGGGGGg -3'
miRNA:   3'- uagCCUUUaaauaaaUCUUCCCCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.