miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9643 3' -46.8 NC_002577.1 + 100584 0.66 0.999924
Target:  5'- cGCGAU---GGGGAGcAACGCuACCGAGc -3'
miRNA:   3'- -CGCUAccuUCCCUUuUUGUG-UGGUUU- -5'
9643 3' -46.8 NC_002577.1 + 152663 0.66 0.999922
Target:  5'- aGUGAacgacuuacaguuUGGAcuguaGGGGAGAAACAUuacCCGAAa -3'
miRNA:   3'- -CGCU-------------ACCU-----UCCCUUUUUGUGu--GGUUU- -5'
9643 3' -46.8 NC_002577.1 + 4251 0.66 0.9999
Target:  5'- gGgGGUGGggGGGAu--AUGCgACCGc- -3'
miRNA:   3'- -CgCUACCuuCCCUuuuUGUG-UGGUuu -5'
9643 3' -46.8 NC_002577.1 + 156866 0.66 0.9999
Target:  5'- uGCGuagagGGAGGGGAGGuAgACGgCAGAg -3'
miRNA:   3'- -CGCua---CCUUCCCUUUuUgUGUgGUUU- -5'
9643 3' -46.8 NC_002577.1 + 140472 0.66 0.9999
Target:  5'- uGCGuagagGGAGGGGAGGuAgACGgCAGAg -3'
miRNA:   3'- -CGCua---CCUUCCCUUUuUgUGUgGUUU- -5'
9643 3' -46.8 NC_002577.1 + 129363 0.66 0.9999
Target:  5'- gGgGGUGGggGGGAu--AUGCgACCGc- -3'
miRNA:   3'- -CgCUACCuuCCCUuuuUGUG-UGGUuu -5'
9643 3' -46.8 NC_002577.1 + 24167 0.66 0.9999
Target:  5'- --cGUGGAAGGGuuAAAgGCgGCCAAu -3'
miRNA:   3'- cgcUACCUUCCCuuUUUgUG-UGGUUu -5'
9643 3' -46.8 NC_002577.1 + 124668 0.66 0.999891
Target:  5'- uGCGggGGAuacaguuucgcgacGGGGAGGAGCcguuagcuCACCGGc -3'
miRNA:   3'- -CGCuaCCU--------------UCCCUUUUUGu-------GUGGUUu -5'
9643 3' -46.8 NC_002577.1 + 8946 0.66 0.999891
Target:  5'- uGCGggGGAuacaguuucgcgacGGGGAGGAGCcguuagcuCACCGGc -3'
miRNA:   3'- -CGCuaCCU--------------UCCCUUUUUGu-------GUGGUUu -5'
9643 3' -46.8 NC_002577.1 + 127040 0.66 0.999829
Target:  5'- uGCGcgGGGAGuGGGGcgGCGguCCAAu -3'
miRNA:   3'- -CGCuaCCUUC-CCUUuuUGUguGGUUu -5'
9643 3' -46.8 NC_002577.1 + 43940 0.66 0.999829
Target:  5'- gGCGcccaaaaacuGUGGAAcGGGAGGAGCucuGCCGAGc -3'
miRNA:   3'- -CGC----------UACCUU-CCCUUUUUGug-UGGUUU- -5'
9643 3' -46.8 NC_002577.1 + 6574 0.66 0.999829
Target:  5'- uGCGcgGGGAGuGGGGcgGCGguCCAAu -3'
miRNA:   3'- -CGCuaCCUUC-CCUUuuUGUguGGUUu -5'
9643 3' -46.8 NC_002577.1 + 58028 0.67 0.99978
Target:  5'- ----gGGGAGGGAAGGGCcucgcuagguaGCGCCAc- -3'
miRNA:   3'- cgcuaCCUUCCCUUUUUG-----------UGUGGUuu -5'
9643 3' -46.8 NC_002577.1 + 30807 0.67 0.99978
Target:  5'- cGCGAUcGGAAGGagcccggaGAGGAGCAgAUCAu- -3'
miRNA:   3'- -CGCUA-CCUUCC--------CUUUUUGUgUGGUuu -5'
9643 3' -46.8 NC_002577.1 + 124520 0.67 0.99978
Target:  5'- uGCGA-GGggGGGGGcGACggGCgACCGGGa -3'
miRNA:   3'- -CGCUaCCuuCCCUUuUUG--UG-UGGUUU- -5'
9643 3' -46.8 NC_002577.1 + 9094 0.67 0.99978
Target:  5'- uGCGA-GGggGGGGGcGACggGCgACCGGGa -3'
miRNA:   3'- -CGCUaCCuuCCCUUuUUG--UG-UGGUUU- -5'
9643 3' -46.8 NC_002577.1 + 143963 0.67 0.999718
Target:  5'- gGgGggGGggGGGggGAugaauccacgGCACGCgCAGc -3'
miRNA:   3'- -CgCuaCCuuCCCuuUU----------UGUGUG-GUUu -5'
9643 3' -46.8 NC_002577.1 + 141321 0.67 0.999641
Target:  5'- aGCaAUGG--GGGAAAcGCGCGCCGGu -3'
miRNA:   3'- -CGcUACCuuCCCUUUuUGUGUGGUUu -5'
9643 3' -46.8 NC_002577.1 + 156017 0.67 0.999641
Target:  5'- aGCaAUGG--GGGAAAcGCGCGCCGGu -3'
miRNA:   3'- -CGcUACCuuCCCUUUuUGUGUGGUUu -5'
9643 3' -46.8 NC_002577.1 + 126036 0.67 0.999641
Target:  5'- uGCGggGGggGGGggGGGgGgGauCCGAAc -3'
miRNA:   3'- -CGCuaCCuuCCCuuUUUgUgU--GGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.