miRNA: 3'- aaaGGCCAaa-------CGGAAAGGGA---AGGUAg -5'
miRNA: 3'- aaAggCCAaACGGAAAGGGAAGGUAG- -5'
miRNA: 3'- aaAggCCAaACGGAAAGGGAAGGUAG- -5'
miRNA: 3'- -AAAGGCCAAACGGAAAGGGAAGGUAG- -5'
miRNA: 3'- -AAAGGCCAAACGGAAAGGGAAGGUAG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9643 | 5' | -50.5 | NC_002577.1 | + | 67248 | 0.67 | 0.985207 |
|
Target: 5'- --cCCGGUgaucuuaacGCUUUUCCCUacaUCCAUg -3' miRNA: 3'- aaaGGCCAaa-------CGGAAAGGGA---AGGUAg -5' |
|||||||
| 9643 | 5' | -50.5 | NC_002577.1 | + | 6825 | 0.8 | 0.446908 |
|
Target: 5'- -gUuuGGUgUGUUUUUCCCUUCCAUCg -3' miRNA: 3'- aaAggCCAaACGGAAAGGGAAGGUAG- -5' |
|||||||
| 9643 | 5' | -50.5 | NC_002577.1 | + | 126788 | 0.8 | 0.446908 |
|
Target: 5'- -gUuuGGUgUGUUUUUCCCUUCCAUCg -3' miRNA: 3'- aaAggCCAaACGGAAAGGGAAGGUAG- -5' |
|||||||
| 9643 | 5' | -50.5 | NC_002577.1 | + | 126942 | 1.09 | 0.008948 |
|
Target: 5'- uUUUCCGGUUUGCCUUUCCCUUCCAUCg -3' miRNA: 3'- -AAAGGCCAAACGGAAAGGGAAGGUAG- -5' |
|||||||
| 9643 | 5' | -50.5 | NC_002577.1 | + | 6672 | 1.09 | 0.008948 |
|
Target: 5'- uUUUCCGGUUUGCCUUUCCCUUCCAUCg -3' miRNA: 3'- -AAAGGCCAAACGGAAAGGGAAGGUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home