miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9644 5' -50.5 NC_002577.1 + 154864 0.66 0.995707
Target:  5'- aGCCccuucucgauucgGCUCGGAgcuaGCCGGGAgAGACg- -3'
miRNA:   3'- gCGG-------------UGAGUCUa---CGGUUUUgUCUGac -5'
9644 5' -50.5 NC_002577.1 + 142473 0.66 0.995707
Target:  5'- aGCCccuucucgauucgGCUCGGAgcuaGCCGGGAgAGACg- -3'
miRNA:   3'- gCGG-------------UGAGUCUa---CGGUUUUgUCUGac -5'
9644 5' -50.5 NC_002577.1 + 77632 0.66 0.993715
Target:  5'- aGCC-CUCGGA-GCCGcuucucgagucgaaaAGACGGACa- -3'
miRNA:   3'- gCGGuGAGUCUaCGGU---------------UUUGUCUGac -5'
9644 5' -50.5 NC_002577.1 + 12656 0.66 0.99231
Target:  5'- gGCCAUUCGGAUGU----AUGGACUa -3'
miRNA:   3'- gCGGUGAGUCUACGguuuUGUCUGAc -5'
9644 5' -50.5 NC_002577.1 + 156214 0.67 0.991162
Target:  5'- aGCCGCgcgggCAGGggauuuagaccgUGgCGGGACGGGCUGc -3'
miRNA:   3'- gCGGUGa----GUCU------------ACgGUUUUGUCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 141124 0.67 0.991162
Target:  5'- aGCCGCgcgggCAGGggauuuagaccgUGgCGGGACGGGCUGc -3'
miRNA:   3'- gCGGUGa----GUCU------------ACgGUUUUGUCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 157094 0.67 0.991162
Target:  5'- cCGCC-CUCGGAaacGCuCGAuuuacGGCGGGCUGg -3'
miRNA:   3'- -GCGGuGAGUCUa--CG-GUU-----UUGUCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 103347 0.67 0.991162
Target:  5'- aCGCCgauAUUCAaAUGCCcuAGCAGACg- -3'
miRNA:   3'- -GCGG---UGAGUcUACGGuuUUGUCUGac -5'
9644 5' -50.5 NC_002577.1 + 140244 0.67 0.991162
Target:  5'- cCGCC-CUCGGAaacGCuCGAuuuacGGCGGGCUGg -3'
miRNA:   3'- -GCGGuGAGUCUa--CG-GUU-----UUGUCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 76268 0.67 0.984613
Target:  5'- uGCCAC-CAGGUGCCGucgagauaucgacgGAGCGGuCa- -3'
miRNA:   3'- gCGGUGaGUCUACGGU--------------UUUGUCuGac -5'
9644 5' -50.5 NC_002577.1 + 133592 0.68 0.982866
Target:  5'- cCGCCGCcaCAGGUGCacucagcccGCGGGCUGc -3'
miRNA:   3'- -GCGGUGa-GUCUACGguuu-----UGUCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 21 0.68 0.982866
Target:  5'- cCGCCGCcaCAGGUGCacucagcccGCGGGCUGc -3'
miRNA:   3'- -GCGGUGa-GUCUACGguuu-----UGUCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 12110 0.69 0.967839
Target:  5'- uCG-CGCUCGGcgcGCCGGAGCAGGCg- -3'
miRNA:   3'- -GCgGUGAGUCua-CGGUUUUGUCUGac -5'
9644 5' -50.5 NC_002577.1 + 85137 0.71 0.929164
Target:  5'- aCGCCACUUAcGcgGCCGcAACuGAUUGa -3'
miRNA:   3'- -GCGGUGAGU-CuaCGGUuUUGuCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 53080 0.73 0.854015
Target:  5'- uCGCCAaUCAGAUGUCGggcgaugggaAAGCAGACg- -3'
miRNA:   3'- -GCGGUgAGUCUACGGU----------UUUGUCUGac -5'
9644 5' -50.5 NC_002577.1 + 121586 0.76 0.712184
Target:  5'- cCGCgCGCUCGGcgcGCCGGAGCAGGCg- -3'
miRNA:   3'- -GCG-GUGAGUCua-CGGUUUUGUCUGac -5'
9644 5' -50.5 NC_002577.1 + 127917 0.77 0.627507
Target:  5'- aGCCGuugUCAGAUGCCAGAG-AGACUGa -3'
miRNA:   3'- gCGGUg--AGUCUACGGUUUUgUCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 5696 0.77 0.627507
Target:  5'- aGCCGuugUCAGAUGCCAGAG-AGACUGa -3'
miRNA:   3'- gCGGUg--AGUCUACGGUUUUgUCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 5536 1.1 0.007978
Target:  5'- gCGCCACUCAGAUGCCAAAACAGACUGg -3'
miRNA:   3'- -GCGGUGAGUCUACGGUUUUGUCUGAC- -5'
9644 5' -50.5 NC_002577.1 + 128078 1.1 0.007978
Target:  5'- gCGCCACUCAGAUGCCAAAACAGACUGg -3'
miRNA:   3'- -GCGGUGAGUCUACGGUUUUGUCUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.