Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9645 | 3' | -51.8 | NC_002577.1 | + | 88423 | 0.66 | 0.987383 |
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Target: 5'- -----aUUUUCUGCGGGCGgaGCACAg -3' miRNA: 3'- cagaaaGAGAGGCGUCCGUaaCGUGU- -5' |
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| 9645 | 3' | -51.8 | NC_002577.1 | + | 92110 | 0.66 | 0.985706 |
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Target: 5'- ---aUUCUCUcCCGCAGcGCAUUcCACu -3' miRNA: 3'- cagaAAGAGA-GGCGUC-CGUAAcGUGu -5' |
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| 9645 | 3' | -51.8 | NC_002577.1 | + | 65221 | 0.66 | 0.98367 |
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Target: 5'- ----aUCUCagcaugaUCCGCuGGCggUGCACAu -3' miRNA: 3'- cagaaAGAG-------AGGCGuCCGuaACGUGU- -5' |
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| 9645 | 3' | -51.8 | NC_002577.1 | + | 90556 | 0.68 | 0.954455 |
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Target: 5'- -----gCUCcCCGCAGGCGUaGUACAc -3' miRNA: 3'- cagaaaGAGaGGCGUCCGUAaCGUGU- -5' |
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| 9645 | 3' | -51.8 | NC_002577.1 | + | 5183 | 0.77 | 0.526391 |
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Target: 5'- -gUUUUCUCUCagGCuGGCAUUGCACGu -3' miRNA: 3'- caGAAAGAGAGg-CGuCCGUAACGUGU- -5' |
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| 9645 | 3' | -51.8 | NC_002577.1 | + | 128431 | 0.77 | 0.526391 |
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Target: 5'- -gUUUUCUCUCagGCuGGCAUUGCACGu -3' miRNA: 3'- caGAAAGAGAGg-CGuCCGUAACGUGU- -5' |
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| 9645 | 3' | -51.8 | NC_002577.1 | + | 128658 | 1.1 | 0.005913 |
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Target: 5'- cGUCUUUCUCUCCGCAGGCAUUGCACAa -3' miRNA: 3'- -CAGAAAGAGAGGCGUCCGUAACGUGU- -5' |
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| 9645 | 3' | -51.8 | NC_002577.1 | + | 4956 | 1.1 | 0.005913 |
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Target: 5'- cGUCUUUCUCUCCGCAGGCAUUGCACAa -3' miRNA: 3'- -CAGAAAGAGAGGCGUCCGUAACGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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