miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9645 5' -53.1 NC_002577.1 + 153626 0.66 0.955104
Target:  5'- aGCGUGgAguGUGCCGGCUU-AGAGAc- -3'
miRNA:   3'- gUGCACgU--UACGGUCGGAcUCUCUuu -5'
9645 5' -53.1 NC_002577.1 + 71771 0.66 0.950948
Target:  5'- cUACGUGCAcgGCUAGCg-GAGAc--- -3'
miRNA:   3'- -GUGCACGUuaCGGUCGgaCUCUcuuu -5'
9645 5' -53.1 NC_002577.1 + 49624 0.67 0.946543
Target:  5'- ---uUGCuaGAUGCCcGUCUGAGAGAGGg -3'
miRNA:   3'- gugcACG--UUACGGuCGGACUCUCUUU- -5'
9645 5' -53.1 NC_002577.1 + 123326 0.67 0.946543
Target:  5'- ----cGCGA-GCCGGCCUcgGAGAGAAc -3'
miRNA:   3'- gugcaCGUUaCGGUCGGA--CUCUCUUu -5'
9645 5' -53.1 NC_002577.1 + 10288 0.67 0.946543
Target:  5'- ----cGCGA-GCCGGCCUcgGAGAGAAc -3'
miRNA:   3'- gugcaCGUUaCGGUCGGA--CUCUCUUu -5'
9645 5' -53.1 NC_002577.1 + 65026 0.67 0.936972
Target:  5'- cCAUGUGCAccGCCAGCggaucaugCUGAGAu--- -3'
miRNA:   3'- -GUGCACGUuaCGGUCG--------GACUCUcuuu -5'
9645 5' -53.1 NC_002577.1 + 115342 0.67 0.931801
Target:  5'- aACGUGCGAUGCCGuuGCCUuuuucccguaGAucuGGGAAGa -3'
miRNA:   3'- gUGCACGUUACGGU--CGGA----------CU---CUCUUU- -5'
9645 5' -53.1 NC_002577.1 + 155775 0.72 0.738365
Target:  5'- cCACGgcuccgGCAGUGCCGGCCUGGc----- -3'
miRNA:   3'- -GUGCa-----CGUUACGGUCGGACUcucuuu -5'
9645 5' -53.1 NC_002577.1 + 141563 0.72 0.738365
Target:  5'- cCACGgcuccgGCAGUGCCGGCCUGGc----- -3'
miRNA:   3'- -GUGCa-----CGUUACGGUCGGACUcucuuu -5'
9645 5' -53.1 NC_002577.1 + 5146 0.74 0.591047
Target:  5'- -uUGUGCAAUGCCuGCg-GAGAGAAAg -3'
miRNA:   3'- guGCACGUUACGGuCGgaCUCUCUUU- -5'
9645 5' -53.1 NC_002577.1 + 128468 0.74 0.591047
Target:  5'- -uUGUGCAAUGCCuGCg-GAGAGAAAg -3'
miRNA:   3'- guGCACGUUACGGuCGgaCUCUCUUU- -5'
9645 5' -53.1 NC_002577.1 + 4991 1.07 0.006143
Target:  5'- aCACGUGCAAUGCCAGCCUGAGAGAAAa -3'
miRNA:   3'- -GUGCACGUUACGGUCGGACUCUCUUU- -5'
9645 5' -53.1 NC_002577.1 + 128622 1.07 0.006143
Target:  5'- aCACGUGCAAUGCCAGCCUGAGAGAAAa -3'
miRNA:   3'- -GUGCACGUUACGGUCGGACUCUCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.