Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9646 | 3' | -53.7 | NC_002577.1 | + | 121768 | 0.66 | 0.96346 |
Target: 5'- cCGGcgcgCCgaGCGCGCGGUACa--AGAUg -3' miRNA: 3'- -GCCa---GGaaCGCGCGUCAUGaacUCUG- -5' |
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9646 | 3' | -53.7 | NC_002577.1 | + | 118027 | 0.66 | 0.956175 |
Target: 5'- uGcGUUUUUcGCGCGCGGguaUUGGGACg -3' miRNA: 3'- gC-CAGGAA-CGCGCGUCaugAACUCUG- -5' |
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9646 | 3' | -53.7 | NC_002577.1 | + | 6798 | 0.7 | 0.855556 |
Target: 5'- aGGUCg-UGC-CGCAGUACUUuugaaucggaggGAGACg -3' miRNA: 3'- gCCAGgaACGcGCGUCAUGAA------------CUCUG- -5' |
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9646 | 3' | -53.7 | NC_002577.1 | + | 126815 | 0.7 | 0.855556 |
Target: 5'- aGGUCg-UGC-CGCAGUACUUuugaaucggaggGAGACg -3' miRNA: 3'- gCCAGgaACGcGCGUCAUGAA------------CUCUG- -5' |
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9646 | 3' | -53.7 | NC_002577.1 | + | 96884 | 0.71 | 0.804699 |
Target: 5'- uGGUCC--GCGCGCGG-ACacGAGACc -3' miRNA: 3'- gCCAGGaaCGCGCGUCaUGaaCUCUG- -5' |
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9646 | 3' | -53.7 | NC_002577.1 | + | 4738 | 0.71 | 0.786369 |
Target: 5'- --cUCCUU-CGCGgGGUGCUUGAGAUc -3' miRNA: 3'- gccAGGAAcGCGCgUCAUGAACUCUG- -5' |
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9646 | 3' | -53.7 | NC_002577.1 | + | 128875 | 0.71 | 0.786369 |
Target: 5'- --cUCCUU-CGCGgGGUGCUUGAGAUc -3' miRNA: 3'- gccAGGAAcGCGCgUCAUGAACUCUG- -5' |
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9646 | 3' | -53.7 | NC_002577.1 | + | 128964 | 1.1 | 0.003863 |
Target: 5'- uCGGUCCUUGCGCGCAGUACUUGAGACg -3' miRNA: 3'- -GCCAGGAACGCGCGUCAUGAACUCUG- -5' |
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9646 | 3' | -53.7 | NC_002577.1 | + | 4650 | 1.1 | 0.003863 |
Target: 5'- uCGGUCCUUGCGCGCAGUACUUGAGACg -3' miRNA: 3'- -GCCAGGAACGCGCGUCAUGAACUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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