miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9646 5' -52.4 NC_002577.1 + 73961 0.66 0.980849
Target:  5'- cGAUCUCcgGGaGCAuCCGCGUcggAAGGAUGg -3'
miRNA:   3'- uUUAGAG--UC-CGU-GGUGCGa--UUCCUGC- -5'
9646 5' -52.4 NC_002577.1 + 64326 0.66 0.973446
Target:  5'- ---cCUCGGGCuugaaggaaACCACGCUcguGGAUa -3'
miRNA:   3'- uuuaGAGUCCG---------UGGUGCGAuu-CCUGc -5'
9646 5' -52.4 NC_002577.1 + 128773 0.66 0.97057
Target:  5'- -cGUCUCAaGUACUGCGCgcAAGGACc -3'
miRNA:   3'- uuUAGAGUcCGUGGUGCGa-UUCCUGc -5'
9646 5' -52.4 NC_002577.1 + 4840 0.66 0.97057
Target:  5'- -cGUCUCAaGUACUGCGCgcAAGGACc -3'
miRNA:   3'- uuUAGAGUcCGUGGUGCGa-UUCCUGc -5'
9646 5' -52.4 NC_002577.1 + 128909 0.67 0.960617
Target:  5'- gGGAUCga--GCACCACGCcGAuGGACGg -3'
miRNA:   3'- -UUUAGagucCGUGGUGCGaUU-CCUGC- -5'
9646 5' -52.4 NC_002577.1 + 4704 0.67 0.960617
Target:  5'- gGGAUCga--GCACCACGCcGAuGGACGg -3'
miRNA:   3'- -UUUAGagucCGUGGUGCGaUU-CCUGC- -5'
9646 5' -52.4 NC_002577.1 + 130441 0.67 0.956837
Target:  5'- -uGUCaUCAaGCACCACGUcGAuGGACGg -3'
miRNA:   3'- uuUAG-AGUcCGUGGUGCGaUU-CCUGC- -5'
9646 5' -52.4 NC_002577.1 + 3173 0.67 0.956837
Target:  5'- -uGUCaUCAaGCACCACGUcGAuGGACGg -3'
miRNA:   3'- uuUAG-AGUcCGUGGUGCGaUU-CCUGC- -5'
9646 5' -52.4 NC_002577.1 + 65326 0.67 0.952816
Target:  5'- ---aCUCAGGCGgCGCGUacuGGACu -3'
miRNA:   3'- uuuaGAGUCCGUgGUGCGauuCCUGc -5'
9646 5' -52.4 NC_002577.1 + 4655 0.68 0.928985
Target:  5'- uGAAUCgcaacgAGGCcggGCCGCGCUGcaGGGAUGg -3'
miRNA:   3'- -UUUAGag----UCCG---UGGUGCGAU--UCCUGC- -5'
9646 5' -52.4 NC_002577.1 + 128958 0.68 0.928985
Target:  5'- uGAAUCgcaacgAGGCcggGCCGCGCUGcaGGGAUGg -3'
miRNA:   3'- -UUUAGag----UCCG---UGGUGCGAU--UCCUGC- -5'
9646 5' -52.4 NC_002577.1 + 32920 0.69 0.911639
Target:  5'- aAAAUCgUCAGGUuuaaauaguCCACGC-AAGGAUGa -3'
miRNA:   3'- -UUUAG-AGUCCGu--------GGUGCGaUUCCUGC- -5'
9646 5' -52.4 NC_002577.1 + 129063 0.7 0.892024
Target:  5'- uGAUCUCAaGCACCcCGCgAAGGAgGa -3'
miRNA:   3'- uUUAGAGUcCGUGGuGCGaUUCCUgC- -5'
9646 5' -52.4 NC_002577.1 + 4551 0.7 0.892024
Target:  5'- uGAUCUCAaGCACCcCGCgAAGGAgGa -3'
miRNA:   3'- uUUAGAGUcCGUGGuGCGaUUCCUgC- -5'
9646 5' -52.4 NC_002577.1 + 2075 0.7 0.854538
Target:  5'- aGGGUCUCAGGCGgcgUUugGCuUAGGGGCc -3'
miRNA:   3'- -UUUAGAGUCCGU---GGugCG-AUUCCUGc -5'
9646 5' -52.4 NC_002577.1 + 131539 0.7 0.854538
Target:  5'- aGGGUCUCAGGCGgcgUUugGCuUAGGGGCc -3'
miRNA:   3'- -UUUAGAGUCCGU---GGugCG-AUUCCUGc -5'
9646 5' -52.4 NC_002577.1 + 3407 0.77 0.536224
Target:  5'- --uUCUCGGGCACCGCaCcgAAGGAUGg -3'
miRNA:   3'- uuuAGAGUCCGUGGUGcGa-UUCCUGC- -5'
9646 5' -52.4 NC_002577.1 + 130207 0.77 0.536224
Target:  5'- --uUCUCGGGCACCGCaCcgAAGGAUGg -3'
miRNA:   3'- uuuAGAGUCCGUGGUGcGa-UUCCUGC- -5'
9646 5' -52.4 NC_002577.1 + 60506 0.78 0.485975
Target:  5'- --uUCUCAGGUAUCGCGCUuuGGAgGa -3'
miRNA:   3'- uuuAGAGUCCGUGGUGCGAuuCCUgC- -5'
9646 5' -52.4 NC_002577.1 + 4687 1.08 0.007063
Target:  5'- aAAAUCUCAGGCACCACGCUAAGGACGg -3'
miRNA:   3'- -UUUAGAGUCCGUGGUGCGAUUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.