Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9646 | 5' | -52.4 | NC_002577.1 | + | 128773 | 0.66 | 0.97057 |
Target: 5'- -cGUCUCAaGUACUGCGCgcAAGGACc -3' miRNA: 3'- uuUAGAGUcCGUGGUGCGa-UUCCUGc -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 60506 | 0.78 | 0.485975 |
Target: 5'- --uUCUCAGGUAUCGCGCUuuGGAgGa -3' miRNA: 3'- uuuAGAGUCCGUGGUGCGAuuCCUgC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 130207 | 0.77 | 0.536224 |
Target: 5'- --uUCUCGGGCACCGCaCcgAAGGAUGg -3' miRNA: 3'- uuuAGAGUCCGUGGUGcGa-UUCCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 131539 | 0.7 | 0.854538 |
Target: 5'- aGGGUCUCAGGCGgcgUUugGCuUAGGGGCc -3' miRNA: 3'- -UUUAGAGUCCGU---GGugCG-AUUCCUGc -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 4551 | 0.7 | 0.892024 |
Target: 5'- uGAUCUCAaGCACCcCGCgAAGGAgGa -3' miRNA: 3'- uUUAGAGUcCGUGGuGCGaUUCCUgC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 32920 | 0.69 | 0.911639 |
Target: 5'- aAAAUCgUCAGGUuuaaauaguCCACGC-AAGGAUGa -3' miRNA: 3'- -UUUAG-AGUCCGu--------GGUGCGaUUCCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 128958 | 0.68 | 0.928985 |
Target: 5'- uGAAUCgcaacgAGGCcggGCCGCGCUGcaGGGAUGg -3' miRNA: 3'- -UUUAGag----UCCG---UGGUGCGAU--UCCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 130441 | 0.67 | 0.956837 |
Target: 5'- -uGUCaUCAaGCACCACGUcGAuGGACGg -3' miRNA: 3'- uuUAG-AGUcCGUGGUGCGaUU-CCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 128909 | 0.67 | 0.960617 |
Target: 5'- gGGAUCga--GCACCACGCcGAuGGACGg -3' miRNA: 3'- -UUUAGagucCGUGGUGCGaUU-CCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 4687 | 1.08 | 0.007063 |
Target: 5'- aAAAUCUCAGGCACCACGCUAAGGACGg -3' miRNA: 3'- -UUUAGAGUCCGUGGUGCGAUUCCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 128927 | 1.08 | 0.007063 |
Target: 5'- aAAAUCUCAGGCACCACGCUAAGGACGg -3' miRNA: 3'- -UUUAGAGUCCGUGGUGCGAUUCCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 3407 | 0.77 | 0.536224 |
Target: 5'- --uUCUCGGGCACCGCaCcgAAGGAUGg -3' miRNA: 3'- uuuAGAGUCCGUGGUGcGa-UUCCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 64326 | 0.66 | 0.973446 |
Target: 5'- ---cCUCGGGCuugaaggaaACCACGCUcguGGAUa -3' miRNA: 3'- uuuaGAGUCCG---------UGGUGCGAuu-CCUGc -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 4840 | 0.66 | 0.97057 |
Target: 5'- -cGUCUCAaGUACUGCGCgcAAGGACc -3' miRNA: 3'- uuUAGAGUcCGUGGUGCGa-UUCCUGc -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 4704 | 0.67 | 0.960617 |
Target: 5'- gGGAUCga--GCACCACGCcGAuGGACGg -3' miRNA: 3'- -UUUAGagucCGUGGUGCGaUU-CCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 3173 | 0.67 | 0.956837 |
Target: 5'- -uGUCaUCAaGCACCACGUcGAuGGACGg -3' miRNA: 3'- uuUAG-AGUcCGUGGUGCGaUU-CCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 65326 | 0.67 | 0.952816 |
Target: 5'- ---aCUCAGGCGgCGCGUacuGGACu -3' miRNA: 3'- uuuaGAGUCCGUgGUGCGauuCCUGc -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 4655 | 0.68 | 0.928985 |
Target: 5'- uGAAUCgcaacgAGGCcggGCCGCGCUGcaGGGAUGg -3' miRNA: 3'- -UUUAGag----UCCG---UGGUGCGAU--UCCUGC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 129063 | 0.7 | 0.892024 |
Target: 5'- uGAUCUCAaGCACCcCGCgAAGGAgGa -3' miRNA: 3'- uUUAGAGUcCGUGGuGCGaUUCCUgC- -5' |
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9646 | 5' | -52.4 | NC_002577.1 | + | 2075 | 0.7 | 0.854538 |
Target: 5'- aGGGUCUCAGGCGgcgUUugGCuUAGGGGCc -3' miRNA: 3'- -UUUAGAGUCCGU---GGugCG-AUUCCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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