miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9647 3' -56.7 NC_002577.1 + 109649 0.67 0.89397
Target:  5'- uGUCCAgaacgCaGCGUGGUGUUCGuGUUUa -3'
miRNA:   3'- gCAGGUa----GcCGCACCACGAGC-UAGGg -5'
9647 3' -56.7 NC_002577.1 + 3178 0.67 0.887397
Target:  5'- uCGUCCcgCGGCGUuccGGaUGacguuUCGAgggCCCa -3'
miRNA:   3'- -GCAGGuaGCCGCA---CC-ACg----AGCUa--GGG- -5'
9647 3' -56.7 NC_002577.1 + 130435 0.67 0.887397
Target:  5'- uCGUCCcgCGGCGUuccGGaUGacguuUCGAgggCCCa -3'
miRNA:   3'- -GCAGGuaGCCGCA---CC-ACg----AGCUa--GGG- -5'
9647 3' -56.7 NC_002577.1 + 30585 0.67 0.873612
Target:  5'- gGcCCGUCGGauUGGcGCUCGGUCg- -3'
miRNA:   3'- gCaGGUAGCCgcACCaCGAGCUAGgg -5'
9647 3' -56.7 NC_002577.1 + 130147 0.67 0.866407
Target:  5'- aGUCCGcCGGCa-GG-GCUCGAgcaaacaaacUCCCa -3'
miRNA:   3'- gCAGGUaGCCGcaCCaCGAGCU----------AGGG- -5'
9647 3' -56.7 NC_002577.1 + 3467 0.67 0.866407
Target:  5'- aGUCCGcCGGCa-GG-GCUCGAgcaaacaaacUCCCa -3'
miRNA:   3'- gCAGGUaGCCGcaCCaCGAGCU----------AGGG- -5'
9647 3' -56.7 NC_002577.1 + 143155 0.68 0.851402
Target:  5'- aGUCguUCcGCGcugGGUGCUCGccgcacgccccgGUCCCa -3'
miRNA:   3'- gCAGguAGcCGCa--CCACGAGC------------UAGGG- -5'
9647 3' -56.7 NC_002577.1 + 2983 0.7 0.737003
Target:  5'- cCGUCCAUCGaC-UGGUGCUUGAUgacaggaUCCa -3'
miRNA:   3'- -GCAGGUAGCcGcACCACGAGCUA-------GGG- -5'
9647 3' -56.7 NC_002577.1 + 130631 0.81 0.21432
Target:  5'- cCGUCCAUCGaCGUGGUGCUUGAUgacaggaUCCa -3'
miRNA:   3'- -GCAGGUAGCcGCACCACGAGCUA-------GGG- -5'
9647 3' -56.7 NC_002577.1 + 4515 1.13 0.001868
Target:  5'- cCGUCCAUCGGCGUGGUGCUCGAUCCCg -3'
miRNA:   3'- -GCAGGUAGCCGCACCACGAGCUAGGG- -5'
9647 3' -56.7 NC_002577.1 + 129099 1.13 0.001868
Target:  5'- cCGUCCAUCGGCGUGGUGCUCGAUCCCg -3'
miRNA:   3'- -GCAGGUAGCCGCACCACGAGCUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.