miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9647 5' -54.8 NC_002577.1 + 9460 0.66 0.950552
Target:  5'- uUGGUUUCGAGgGCCgUGCG-GGGAa -3'
miRNA:   3'- cACUAGAGUUCgUGGgGCGCuUCCUc -5'
9647 5' -54.8 NC_002577.1 + 124154 0.66 0.950552
Target:  5'- uUGGUUUCGAGgGCCgUGCG-GGGAa -3'
miRNA:   3'- cACUAGAGUUCgUGGgGCGCuUCCUc -5'
9647 5' -54.8 NC_002577.1 + 3426 0.66 0.928846
Target:  5'- uGUGAgaggucgucaucccuUCUCGGGCACCgCacCGAAGGAu -3'
miRNA:   3'- -CACU---------------AGAGUUCGUGGgGc-GCUUCCUc -5'
9647 5' -54.8 NC_002577.1 + 130188 0.66 0.928846
Target:  5'- uGUGAgaggucgucaucccuUCUCGGGCACCgCacCGAAGGAu -3'
miRNA:   3'- -CACU---------------AGAGUUCGUGGgGc-GCUUCCUc -5'
9647 5' -54.8 NC_002577.1 + 73961 0.68 0.861141
Target:  5'- -cGAUCUCcggGAGCAUCCgCGUcgGAAGGAu -3'
miRNA:   3'- caCUAGAG---UUCGUGGG-GCG--CUUCCUc -5'
9647 5' -54.8 NC_002577.1 + 43861 0.68 0.853349
Target:  5'- gGUGucuGUCUCgAAGCGCCCgcaCGCaGggGGGGu -3'
miRNA:   3'- -CAC---UAGAG-UUCGUGGG---GCG-CuuCCUC- -5'
9647 5' -54.8 NC_002577.1 + 128933 0.69 0.83716
Target:  5'- cGUGuuaaaAUCUCAGGCACCaCGCuAAGGAc -3'
miRNA:   3'- -CAC-----UAGAGUUCGUGGgGCGcUUCCUc -5'
9647 5' -54.8 NC_002577.1 + 4681 0.69 0.83716
Target:  5'- cGUGuuaaaAUCUCAGGCACCaCGCuAAGGAc -3'
miRNA:   3'- -CAC-----UAGAGUUCGUGGgGCGcUUCCUc -5'
9647 5' -54.8 NC_002577.1 + 156249 0.69 0.820214
Target:  5'- -gGggCUCGugcgccggcaaGGCugCCCGCGAcGGGAGc -3'
miRNA:   3'- caCuaGAGU-----------UCGugGGGCGCU-UCCUC- -5'
9647 5' -54.8 NC_002577.1 + 141089 0.69 0.820214
Target:  5'- -gGggCUCGugcgccggcaaGGCugCCCGCGAcGGGAGc -3'
miRNA:   3'- caCuaGAGU-----------UCGugGGGCGCU-UCCUC- -5'
9647 5' -54.8 NC_002577.1 + 28666 0.7 0.802573
Target:  5'- aGUGGUCUCGcgaGGUAUCCCuugggccggcaGaCGGAGGAGa -3'
miRNA:   3'- -CACUAGAGU---UCGUGGGG-----------C-GCUUCCUC- -5'
9647 5' -54.8 NC_002577.1 + 158869 0.7 0.784306
Target:  5'- -aGAUCUgGAGCgacACCCgaGCGAAGGGu -3'
miRNA:   3'- caCUAGAgUUCG---UGGGg-CGCUUCCUc -5'
9647 5' -54.8 NC_002577.1 + 138469 0.7 0.784306
Target:  5'- -aGAUCUgGAGCgacACCCgaGCGAAGGGu -3'
miRNA:   3'- caCUAGAgUUCG---UGGGg-CGCUUCCUc -5'
9647 5' -54.8 NC_002577.1 + 128773 0.7 0.774959
Target:  5'- --cGUCUCAAGUACUgCGCGcAAGGAc -3'
miRNA:   3'- cacUAGAGUUCGUGGgGCGC-UUCCUc -5'
9647 5' -54.8 NC_002577.1 + 4840 0.7 0.774959
Target:  5'- --cGUCUCAAGUACUgCGCGcAAGGAc -3'
miRNA:   3'- cacUAGAGUUCGUGGgGCGC-UUCCUc -5'
9647 5' -54.8 NC_002577.1 + 4549 1.09 0.003684
Target:  5'- gGUGAUCUCAAGCACCCCGCGAAGGAGg -3'
miRNA:   3'- -CACUAGAGUUCGUGGGGCGCUUCCUC- -5'
9647 5' -54.8 NC_002577.1 + 129065 1.09 0.003684
Target:  5'- gGUGAUCUCAAGCACCCCGCGAAGGAGg -3'
miRNA:   3'- -CACUAGAGUUCGUGGGGCGCUUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.