miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9648 3' -57 NC_002577.1 + 155412 0.66 0.861576
Target:  5'- ----aACCCGaaGCGGaCCGGCCCuuGAGc -3'
miRNA:   3'- cagaaUGGGU--UGUC-GGCUGGGggCUU- -5'
9648 3' -57 NC_002577.1 + 155974 0.66 0.861576
Target:  5'- ----cACCgAGCguGGCCGuGCCCCCGAc -3'
miRNA:   3'- cagaaUGGgUUG--UCGGC-UGGGGGCUu -5'
9648 3' -57 NC_002577.1 + 141925 0.66 0.861576
Target:  5'- ----aACCCGaaGCGGaCCGGCCCuuGAGc -3'
miRNA:   3'- cagaaUGGGU--UGUC-GGCUGGGggCUU- -5'
9648 3' -57 NC_002577.1 + 141363 0.66 0.861576
Target:  5'- ----cACCgAGCguGGCCGuGCCCCCGAc -3'
miRNA:   3'- cagaaUGGgUUG--UCGGC-UGGGGGCUu -5'
9648 3' -57 NC_002577.1 + 454 0.67 0.83784
Target:  5'- -cCUaACCCcgaccgugauGACAgGCCGaACCCCCGAc -3'
miRNA:   3'- caGAaUGGG----------UUGU-CGGC-UGGGGGCUu -5'
9648 3' -57 NC_002577.1 + 133160 0.67 0.83784
Target:  5'- -cCUaACCCcgaccgugauGACAgGCCGaACCCCCGAc -3'
miRNA:   3'- caGAaUGGG----------UUGU-CGGC-UGGGGGCUu -5'
9648 3' -57 NC_002577.1 + 125875 0.67 0.829546
Target:  5'- uUCUccgCCGACucGCCGACCgCCCGGAa -3'
miRNA:   3'- cAGAaugGGUUGu-CGGCUGG-GGGCUU- -5'
9648 3' -57 NC_002577.1 + 7739 0.67 0.829546
Target:  5'- uUCUccgCCGACucGCCGACCgCCCGGAa -3'
miRNA:   3'- cAGAaugGGUUGu-CGGCUGG-GGGCUU- -5'
9648 3' -57 NC_002577.1 + 10304 0.68 0.747813
Target:  5'- uGUCUggccgGCUCGGCgcgAGCCGGCCUCgGAGa -3'
miRNA:   3'- -CAGAa----UGGGUUG---UCGGCUGGGGgCUU- -5'
9648 3' -57 NC_002577.1 + 123310 0.68 0.747813
Target:  5'- uGUCUggccgGCUCGGCgcgAGCCGGCCUCgGAGa -3'
miRNA:   3'- -CAGAa----UGGGUUG---UCGGCUGGGGgCUU- -5'
9648 3' -57 NC_002577.1 + 41569 0.7 0.657881
Target:  5'- uGUCgcgGCCCAACAGaagcgugaCCGG-CCCCGAAg -3'
miRNA:   3'- -CAGaa-UGGGUUGUC--------GGCUgGGGGCUU- -5'
9648 3' -57 NC_002577.1 + 139103 0.7 0.657881
Target:  5'- cGUCUggGgCCAGCAGUa-ACCCCCGAc -3'
miRNA:   3'- -CAGAa-UgGGUUGUCGgcUGGGGGCUu -5'
9648 3' -57 NC_002577.1 + 158235 0.7 0.657881
Target:  5'- cGUCUggGgCCAGCAGUa-ACCCCCGAc -3'
miRNA:   3'- -CAGAa-UgGGUUGUCGgcUGGGGGCUu -5'
9648 3' -57 NC_002577.1 + 103523 0.71 0.606778
Target:  5'- aGUCUccCCUAGCGGCgCG-CCCCCGGu -3'
miRNA:   3'- -CAGAauGGGUUGUCG-GCuGGGGGCUu -5'
9648 3' -57 NC_002577.1 + 112067 0.74 0.450201
Target:  5'- ----gGCCCuuGACGGCCGAUUCCCGAAu -3'
miRNA:   3'- cagaaUGGG--UUGUCGGCUGGGGGCUU- -5'
9648 3' -57 NC_002577.1 + 129255 1.06 0.003683
Target:  5'- cGUCUUACCCAACAGCCGACCCCCGAAc -3'
miRNA:   3'- -CAGAAUGGGUUGUCGGCUGGGGGCUU- -5'
9648 3' -57 NC_002577.1 + 4359 1.06 0.003683
Target:  5'- cGUCUUACCCAACAGCCGACCCCCGAAc -3'
miRNA:   3'- -CAGAAUGGGUUGUCGGCUGGGGGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.