miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9648 5' -56.2 NC_002577.1 + 163102 0.66 0.928133
Target:  5'- -gCCggCAAGAGUCGGUCa---GAGAGCg -3'
miRNA:   3'- gaGG--GUUCUCAGCCGGcaucCUCUCG- -5'
9648 5' -56.2 NC_002577.1 + 134226 0.66 0.928133
Target:  5'- -gCCggCAAGAGUCGGUCa---GAGAGCg -3'
miRNA:   3'- gaGG--GUUCUCAGCCGGcaucCUCUCG- -5'
9648 5' -56.2 NC_002577.1 + 158855 0.66 0.922806
Target:  5'- -aCCCGagcgaAGGGUacgaGGCCGgGGGAG-GCc -3'
miRNA:   3'- gaGGGU-----UCUCAg---CCGGCaUCCUCuCG- -5'
9648 5' -56.2 NC_002577.1 + 138483 0.66 0.922806
Target:  5'- -aCCCGagcgaAGGGUacgaGGCCGgGGGAG-GCc -3'
miRNA:   3'- gaGGGU-----UCUCAg---CCGGCaUCCUCuCG- -5'
9648 5' -56.2 NC_002577.1 + 9235 0.67 0.89269
Target:  5'- uCUCCCuccuccGGUCGuCCGUAGGAGcccucuGCg -3'
miRNA:   3'- -GAGGGuuc---UCAGCcGGCAUCCUCu-----CG- -5'
9648 5' -56.2 NC_002577.1 + 103712 0.67 0.885985
Target:  5'- --aCCGGGGG-CGcGCCGcUAGGGGAGa -3'
miRNA:   3'- gagGGUUCUCaGC-CGGC-AUCCUCUCg -5'
9648 5' -56.2 NC_002577.1 + 140994 0.67 0.87906
Target:  5'- cCUCgCCAGGAGaccccugaugCGcGCCGUcGGGGGGUu -3'
miRNA:   3'- -GAG-GGUUCUCa---------GC-CGGCAuCCUCUCG- -5'
9648 5' -56.2 NC_002577.1 + 156343 0.67 0.87906
Target:  5'- cCUCgCCAGGAGaccccugaugCGcGCCGUcGGGGGGUu -3'
miRNA:   3'- -GAG-GGUUCUCa---------GC-CGGCAuCCUCUCG- -5'
9648 5' -56.2 NC_002577.1 + 124378 0.67 0.857013
Target:  5'- uCUCCCuccuccGGUCGuCCGUAGGAGccucuGCg -3'
miRNA:   3'- -GAGGGuuc---UCAGCcGGCAUCCUCu----CG- -5'
9648 5' -56.2 NC_002577.1 + 127993 0.68 0.840504
Target:  5'- aUCCCAAua---GGCCGUgccgggauaucagAGGAGAGCc -3'
miRNA:   3'- gAGGGUUcucagCCGGCA-------------UCCUCUCG- -5'
9648 5' -56.2 NC_002577.1 + 141829 0.68 0.816378
Target:  5'- -aCCUAuGGGGcUCGGCUGauucGGAGAGCa -3'
miRNA:   3'- gaGGGU-UCUC-AGCCGGCau--CCUCUCG- -5'
9648 5' -56.2 NC_002577.1 + 155509 0.68 0.816378
Target:  5'- -aCCUAuGGGGcUCGGCUGauucGGAGAGCa -3'
miRNA:   3'- gaGGGU-UCUC-AGCCGGCau--CCUCUCG- -5'
9648 5' -56.2 NC_002577.1 + 136268 0.69 0.807729
Target:  5'- gCUCgCCu-GGGUUGGCCGUguacAGGAugacgaGAGCg -3'
miRNA:   3'- -GAG-GGuuCUCAGCCGGCA----UCCU------CUCG- -5'
9648 5' -56.2 NC_002577.1 + 161070 0.69 0.807729
Target:  5'- gCUCgCCu-GGGUUGGCCGUguacAGGAugacgaGAGCg -3'
miRNA:   3'- -GAG-GGuuCUCAGCCGGCA----UCCU------CUCG- -5'
9648 5' -56.2 NC_002577.1 + 142069 0.69 0.762315
Target:  5'- uCUCCCGAGGG-CGGUaggaaCGUcGG-GAGCg -3'
miRNA:   3'- -GAGGGUUCUCaGCCG-----GCAuCCuCUCG- -5'
9648 5' -56.2 NC_002577.1 + 155269 0.69 0.762315
Target:  5'- uCUCCCGAGGG-CGGUaggaaCGUcGG-GAGCg -3'
miRNA:   3'- -GAGGGUUCUCaGCCG-----GCAuCCuCUCG- -5'
9648 5' -56.2 NC_002577.1 + 135576 0.72 0.613537
Target:  5'- gUCCCcacuuGAGAG-CGGCUcgGUGGGAGuGCg -3'
miRNA:   3'- gAGGG-----UUCUCaGCCGG--CAUCCUCuCG- -5'
9648 5' -56.2 NC_002577.1 + 161762 0.72 0.613537
Target:  5'- gUCCCcacuuGAGAG-CGGCUcgGUGGGAGuGCg -3'
miRNA:   3'- gAGGG-----UUCUCaGCCGG--CAUCCUCuCG- -5'
9648 5' -56.2 NC_002577.1 + 129220 1.12 0.001938
Target:  5'- gCUCCCAAGAGUCGGCCGUAGGAGAGCa -3'
miRNA:   3'- -GAGGGUUCUCAGCCGGCAUCCUCUCG- -5'
9648 5' -56.2 NC_002577.1 + 4394 1.12 0.001938
Target:  5'- gCUCCCAAGAGUCGGCCGUAGGAGAGCa -3'
miRNA:   3'- -GAGGGUUCUCAGCCGGCAUCCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.