miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9649 3' -53 NC_002577.1 + 219 0.66 0.967658
Target:  5'- gGCAGCCcGCGGGCuGAGugcaCCugUGGcGGCg -3'
miRNA:   3'- -UGUCGGaUGUUCG-UUC----GGugAUC-CUG- -5'
9649 3' -53 NC_002577.1 + 133395 0.66 0.967658
Target:  5'- gGCAGCCcGCGGGCuGAGugcaCCugUGGcGGCg -3'
miRNA:   3'- -UGUCGGaUGUUCG-UUC----GGugAUC-CUG- -5'
9649 3' -53 NC_002577.1 + 11066 0.66 0.967658
Target:  5'- cUAGCCccCGGcGCGGGCCGCggccGGACa -3'
miRNA:   3'- uGUCGGauGUU-CGUUCGGUGau--CCUG- -5'
9649 3' -53 NC_002577.1 + 78781 0.66 0.967658
Target:  5'- -gGGCCU-CAGGCuuAGGCCGg-AGGGCu -3'
miRNA:   3'- ugUCGGAuGUUCG--UUCGGUgaUCCUG- -5'
9649 3' -53 NC_002577.1 + 122547 0.66 0.967658
Target:  5'- cUAGCCccCGGcGCGGGCCGCggccGGACa -3'
miRNA:   3'- uGUCGGauGUU-CGUUCGGUGau--CCUG- -5'
9649 3' -53 NC_002577.1 + 122425 0.66 0.96434
Target:  5'- cCGGCCUACAAauacGCGAGCgGagguccggcgGGGACc -3'
miRNA:   3'- uGUCGGAUGUU----CGUUCGgUga--------UCCUG- -5'
9649 3' -53 NC_002577.1 + 11189 0.66 0.96434
Target:  5'- cCGGCCUACAAauacGCGAGCgGagguccggcgGGGACc -3'
miRNA:   3'- uGUCGGAUGUU----CGUUCGgUga--------UCCUG- -5'
9649 3' -53 NC_002577.1 + 129976 0.66 0.963996
Target:  5'- gGCGGaCUGCAGGCGaagaaguAGCCgggcgcgaagcgGCUGGGAa -3'
miRNA:   3'- -UGUCgGAUGUUCGU-------UCGG------------UGAUCCUg -5'
9649 3' -53 NC_002577.1 + 63586 0.66 0.957005
Target:  5'- -aGGCUaUGCGAGCAGGCCccauCcGGGAUa -3'
miRNA:   3'- ugUCGG-AUGUUCGUUCGGu---GaUCCUG- -5'
9649 3' -53 NC_002577.1 + 118669 0.66 0.952976
Target:  5'- uACAGCUUACuAGCGcaaGGCUg--AGGACa -3'
miRNA:   3'- -UGUCGGAUGuUCGU---UCGGugaUCCUG- -5'
9649 3' -53 NC_002577.1 + 85545 0.67 0.944176
Target:  5'- cCAGCgaauuCUGCAGGCGAGCCAaucuGGCa -3'
miRNA:   3'- uGUCG-----GAUGUUCGUUCGGUgaucCUG- -5'
9649 3' -53 NC_002577.1 + 162280 0.67 0.944176
Target:  5'- aACAGCCggaacGCAAcCGAGCCGC-GGGGu -3'
miRNA:   3'- -UGUCGGa----UGUUcGUUCGGUGaUCCUg -5'
9649 3' -53 NC_002577.1 + 3637 0.67 0.94371
Target:  5'- gGCGGaCUGCAGGCGaagaaguAGCCgggcgcgaagcgGCUGGGAUc -3'
miRNA:   3'- -UGUCgGAUGUUCGU-------UCGG------------UGAUCCUG- -5'
9649 3' -53 NC_002577.1 + 140780 0.67 0.939398
Target:  5'- aGCGGCgUGCAGGCGccggugGGCuUAC-AGGGCg -3'
miRNA:   3'- -UGUCGgAUGUUCGU------UCG-GUGaUCCUG- -5'
9649 3' -53 NC_002577.1 + 156557 0.67 0.939398
Target:  5'- aGCGGCgUGCAGGCGccggugGGCuUAC-AGGGCg -3'
miRNA:   3'- -UGUCGgAUGUUCGU------UCG-GUGaUCCUG- -5'
9649 3' -53 NC_002577.1 + 81149 0.67 0.934365
Target:  5'- -uGGCCUGCGGGUAgaucGGCCAUUauucccguagaGGGAg -3'
miRNA:   3'- ugUCGGAUGUUCGU----UCGGUGA-----------UCCUg -5'
9649 3' -53 NC_002577.1 + 55565 0.67 0.934365
Target:  5'- cGCuGCCgcc--GCAGcGCUACUGGGACg -3'
miRNA:   3'- -UGuCGGauguuCGUU-CGGUGAUCCUG- -5'
9649 3' -53 NC_002577.1 + 54506 0.68 0.923526
Target:  5'- uGCAGCaaaGCAuGGCGAGCUuugcCUGGGAUg -3'
miRNA:   3'- -UGUCGga-UGU-UCGUUCGGu---GAUCCUG- -5'
9649 3' -53 NC_002577.1 + 160581 0.68 0.917721
Target:  5'- uGCAGCUggcgACAGGCGGagguccggcGCCugUccGGGACc -3'
miRNA:   3'- -UGUCGGa---UGUUCGUU---------CGGugA--UCCUG- -5'
9649 3' -53 NC_002577.1 + 136756 0.68 0.917721
Target:  5'- uGCAGCUggcgACAGGCGGagguccggcGCCugUccGGGACc -3'
miRNA:   3'- -UGUCGGa---UGUUCGUU---------CGGugA--UCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.