Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9649 | 5' | -51.7 | NC_002577.1 | + | 85908 | 0.68 | 0.972032 |
Target: 5'- aCGACUccucGGGUGAUGUaaugGCGaaUGUAAGACu -3' miRNA: 3'- -GCUGGu---CUCACUGCA----CGC--ACAUUCUG- -5' |
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9649 | 5' | -51.7 | NC_002577.1 | + | 9287 | 0.72 | 0.868173 |
Target: 5'- uCGAUCGuuaaGGUGuACGUGCGUGUacGAGACc -3' miRNA: 3'- -GCUGGUc---UCAC-UGCACGCACA--UUCUG- -5' |
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9649 | 5' | -51.7 | NC_002577.1 | + | 124327 | 0.72 | 0.868173 |
Target: 5'- uCGAUCGuuaaGGUGuACGUGCGUGUacGAGACc -3' miRNA: 3'- -GCUGGUc---UCAC-UGCACGCACA--UUCUG- -5' |
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9649 | 5' | -51.7 | NC_002577.1 | + | 141739 | 0.72 | 0.835271 |
Target: 5'- -uGCCGGAGccguggcUGugGUGUGUGUAGGGg -3' miRNA: 3'- gcUGGUCUC-------ACugCACGCACAUUCUg -5' |
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9649 | 5' | -51.7 | NC_002577.1 | + | 155599 | 0.72 | 0.835271 |
Target: 5'- -uGCCGGAGccguggcUGugGUGUGUGUAGGGg -3' miRNA: 3'- gcUGGUCUC-------ACugCACGCACAUUCUg -5' |
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9649 | 5' | -51.7 | NC_002577.1 | + | 129341 | 1.11 | 0.006316 |
Target: 5'- uCGACCAGAGUGACGUGCGUGUAAGACg -3' miRNA: 3'- -GCUGGUCUCACUGCACGCACAUUCUG- -5' |
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9649 | 5' | -51.7 | NC_002577.1 | + | 4273 | 1.12 | 0.005639 |
Target: 5'- aCGACCAGAGUGACGUGCGUGUAAGACg -3' miRNA: 3'- -GCUGGUCUCACUGCACGCACAUUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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