miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9651 5' -48.2 NC_002577.1 + 80370 0.66 0.999427
Target:  5'- aUGaGggUAGAGGCucuuCACGCAgCGg -3'
miRNA:   3'- aAC-CuuGUCUUCGuaauGUGUGUgGC- -5'
9651 5' -48.2 NC_002577.1 + 15415 0.66 0.999287
Target:  5'- -aGGAAUcggagGGAGGCcgaaACACGCGCCc -3'
miRNA:   3'- aaCCUUG-----UCUUCGuaa-UGUGUGUGGc -5'
9651 5' -48.2 NC_002577.1 + 156581 0.66 0.999119
Target:  5'- -gGGAgaguuucgacACAGAcggcgAGCGgcgUGCAgGCGCCGg -3'
miRNA:   3'- aaCCU----------UGUCU-----UCGUa--AUGUgUGUGGC- -5'
9651 5' -48.2 NC_002577.1 + 140756 0.66 0.999119
Target:  5'- -gGGAgaguuucgacACAGAcggcgAGCGgcgUGCAgGCGCCGg -3'
miRNA:   3'- aaCCU----------UGUCU-----UCGUa--AUGUgUGUGGC- -5'
9651 5' -48.2 NC_002577.1 + 149997 0.66 0.998918
Target:  5'- cUGGAGCAGGAGCAgcuaAUACuaaCGu -3'
miRNA:   3'- aACCUUGUCUUCGUaaugUGUGug-GC- -5'
9651 5' -48.2 NC_002577.1 + 117056 0.66 0.998896
Target:  5'- aUGGAAUAGucGCuagACcgguacuccucacGCACGCCGg -3'
miRNA:   3'- aACCUUGUCuuCGuaaUG-------------UGUGUGGC- -5'
9651 5' -48.2 NC_002577.1 + 12095 0.66 0.998896
Target:  5'- -cGGAGCAGgcGCGcgUGCGCcucguccgcguccGCGCCc -3'
miRNA:   3'- aaCCUUGUCuuCGUa-AUGUG-------------UGUGGc -5'
9651 5' -48.2 NC_002577.1 + 121603 0.66 0.998896
Target:  5'- -cGGAGCAGgcGCGcgUGCGCcucguccgcguccGCGCCc -3'
miRNA:   3'- aaCCUUGUCuuCGUa-AUGUG-------------UGUGGc -5'
9651 5' -48.2 NC_002577.1 + 93229 0.67 0.998652
Target:  5'- aUUGGAugACGGGGgacucuaacGCAgacugaacauauuUUGCGCGCGCCGa -3'
miRNA:   3'- -AACCU--UGUCUU---------CGU-------------AAUGUGUGUGGC- -5'
9651 5' -48.2 NC_002577.1 + 44783 0.67 0.998396
Target:  5'- cUGGAauuGCAGGAuGCGgauuuugaACGCACCGg -3'
miRNA:   3'- aACCU---UGUCUU-CGUaaug----UGUGUGGC- -5'
9651 5' -48.2 NC_002577.1 + 157994 0.67 0.997675
Target:  5'- -gGGAGuacccgcgccCGGcGGCGgcGCGCACGCCGg -3'
miRNA:   3'- aaCCUU----------GUCuUCGUaaUGUGUGUGGC- -5'
9651 5' -48.2 NC_002577.1 + 139344 0.67 0.997675
Target:  5'- -gGGAGuacccgcgccCGGcGGCGgcGCGCACGCCGg -3'
miRNA:   3'- aaCCUU----------GUCuUCGUaaUGUGUGUGGC- -5'
9651 5' -48.2 NC_002577.1 + 101205 0.67 0.997633
Target:  5'- cUGGGagauccgACAGccacGGCGUUGCACAUaucuGCCGg -3'
miRNA:   3'- aACCU-------UGUCu---UCGUAAUGUGUG----UGGC- -5'
9651 5' -48.2 NC_002577.1 + 128316 0.67 0.997224
Target:  5'- -cGGGACGGAcagGGCG--ACGCGCGCg- -3'
miRNA:   3'- aaCCUUGUCU---UCGUaaUGUGUGUGgc -5'
9651 5' -48.2 NC_002577.1 + 124614 0.67 0.997224
Target:  5'- gUUGGGGgAGggGC---ACGCGCAUCa -3'
miRNA:   3'- -AACCUUgUCuuCGuaaUGUGUGUGGc -5'
9651 5' -48.2 NC_002577.1 + 9000 0.67 0.997224
Target:  5'- gUUGGGGgAGggGC---ACGCGCAUCa -3'
miRNA:   3'- -AACCUUgUCuuCGuaaUGUGUGUGGc -5'
9651 5' -48.2 NC_002577.1 + 5298 0.67 0.997224
Target:  5'- -cGGGACGGAcagGGCG--ACGCGCGCg- -3'
miRNA:   3'- aaCCUUGUCU---UCGUaaUGUGUGUGgc -5'
9651 5' -48.2 NC_002577.1 + 120213 0.68 0.996103
Target:  5'- cUGGAuuACGGAGGaagUGCcaguugguGCACACCGa -3'
miRNA:   3'- aACCU--UGUCUUCguaAUG--------UGUGUGGC- -5'
9651 5' -48.2 NC_002577.1 + 142950 0.69 0.990365
Target:  5'- gUGGGACcGggGCGUgcgGCGaGCACCc -3'
miRNA:   3'- aACCUUGuCuuCGUAa--UGUgUGUGGc -5'
9651 5' -48.2 NC_002577.1 + 4712 0.69 0.990365
Target:  5'- -cGGAGCAGAGcucgguucGCuucgcuCGCGCGCCGa -3'
miRNA:   3'- aaCCUUGUCUU--------CGuaau--GUGUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.