Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9652 | 3' | -56.1 | NC_002577.1 | + | 44900 | 0.66 | 0.886861 |
|
Target: 5'- aUCCUACCCCCccuacuGUGGgGCuGUGACc -3' miRNA: 3'- cAGGAUGGGGGccu---CAUCaCG-UACUG- -5' |
|||||||
| 9652 | 3' | -56.1 | NC_002577.1 | + | 141951 | 0.68 | 0.825129 |
|
Target: 5'- -gUUUGCCCCCGGGGagccUAGUaGCGcUGACc -3' miRNA: 3'- caGGAUGGGGGCCUC----AUCA-CGU-ACUG- -5' |
|||||||
| 9652 | 3' | -56.1 | NC_002577.1 | + | 155387 | 0.68 | 0.825129 |
|
Target: 5'- -gUUUGCCCCCGGGGagccUAGUaGCGcUGACc -3' miRNA: 3'- caGGAUGGGGGCCUC----AUCA-CGU-ACUG- -5' |
|||||||
| 9652 | 3' | -56.1 | NC_002577.1 | + | 156125 | 0.72 | 0.590731 |
|
Target: 5'- cGUCCUGguacggauCUCCCGGGGUGGcGgGUGGCu -3' miRNA: 3'- -CAGGAU--------GGGGGCCUCAUCaCgUACUG- -5' |
|||||||
| 9652 | 3' | -56.1 | NC_002577.1 | + | 141213 | 0.72 | 0.590731 |
|
Target: 5'- cGUCCUGguacggauCUCCCGGGGUGGcGgGUGGCu -3' miRNA: 3'- -CAGGAU--------GGGGGCCUCAUCaCgUACUG- -5' |
|||||||
| 9652 | 3' | -56.1 | NC_002577.1 | + | 128816 | 0.75 | 0.444666 |
|
Target: 5'- cGUgCUACCCUCGGAGgGGgGCAUGAg -3' miRNA: 3'- -CAgGAUGGGGGCCUCaUCaCGUACUg -5' |
|||||||
| 9652 | 3' | -56.1 | NC_002577.1 | + | 4798 | 0.75 | 0.444666 |
|
Target: 5'- cGUgCUACCCUCGGAGgGGgGCAUGAg -3' miRNA: 3'- -CAgGAUGGGGGCCUCaUCaCGUACUg -5' |
|||||||
| 9652 | 3' | -56.1 | NC_002577.1 | + | 130264 | 1.1 | 0.002295 |
|
Target: 5'- cGUCCUACCCCCGGAGUAGUGCAUGACg -3' miRNA: 3'- -CAGGAUGGGGGCCUCAUCACGUACUG- -5' |
|||||||
| 9652 | 3' | -56.1 | NC_002577.1 | + | 3350 | 1.1 | 0.002295 |
|
Target: 5'- cGUCCUACCCCCGGAGUAGUGCAUGACg -3' miRNA: 3'- -CAGGAUGGGGGCCUCAUCACGUACUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home