miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9652 5' -56.1 NC_002577.1 + 11825 0.67 0.882715
Target:  5'- gCGGuCGGGuCGCgaucgCGUCCGucGGAucGGCg -3'
miRNA:   3'- gGCC-GUUC-GUGa----GCAGGCuuCCU--CCG- -5'
9652 5' -56.1 NC_002577.1 + 82473 0.67 0.882715
Target:  5'- gUCGGCAAcGCACUacaCGaauauuacUUGAAGGGGGCu -3'
miRNA:   3'- -GGCCGUU-CGUGA---GCa-------GGCUUCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 121788 0.67 0.882715
Target:  5'- gCGGuCGGGuCGCgaucgCGUCCGucGGAucGGCg -3'
miRNA:   3'- gGCC-GUUC-GUGa----GCAGGCuuCCU--CCG- -5'
9652 5' -56.1 NC_002577.1 + 158319 0.67 0.875732
Target:  5'- gCGGgaggGAGCGCgguggCGggCGggGGGGGCa -3'
miRNA:   3'- gGCCg---UUCGUGa----GCagGCuuCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 139018 0.67 0.875732
Target:  5'- gCGGgaggGAGCGCgguggCGggCGggGGGGGCa -3'
miRNA:   3'- gGCCg---UUCGUGa----GCagGCuuCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 73956 0.67 0.875732
Target:  5'- uCCGG-GAGCAUccgCGUCgGAAGGAuGGg -3'
miRNA:   3'- -GGCCgUUCGUGa--GCAGgCUUCCU-CCg -5'
9652 5' -56.1 NC_002577.1 + 130347 0.67 0.875022
Target:  5'- gCCGcGuCGAGCAC-CGUgCUGGAGGAaggagauGGCg -3'
miRNA:   3'- -GGC-C-GUUCGUGaGCA-GGCUUCCU-------CCG- -5'
9652 5' -56.1 NC_002577.1 + 3267 0.67 0.875022
Target:  5'- gCCGcGuCGAGCAC-CGUgCUGGAGGAaggagauGGCg -3'
miRNA:   3'- -GGC-C-GUUCGUGaGCA-GGCUUCCU-------CCG- -5'
9652 5' -56.1 NC_002577.1 + 156604 0.68 0.868538
Target:  5'- -gGGgGGGCACgc--CCGAGGGAGGg -3'
miRNA:   3'- ggCCgUUCGUGagcaGGCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 140733 0.68 0.868538
Target:  5'- -gGGgGGGCACgc--CCGAGGGAGGg -3'
miRNA:   3'- ggCCgUUCGUGagcaGGCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 135636 0.68 0.861139
Target:  5'- gCGGCcucuGGCGCcCGgccacaagggCCG-AGGAGGCu -3'
miRNA:   3'- gGCCGu---UCGUGaGCa---------GGCuUCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 136569 0.68 0.861139
Target:  5'- gCCGGCAuagccAGCAaUCGgaguUCCaauGGGGGGCu -3'
miRNA:   3'- -GGCCGU-----UCGUgAGC----AGGcu-UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 161702 0.68 0.861139
Target:  5'- gCGGCcucuGGCGCcCGgccacaagggCCG-AGGAGGCu -3'
miRNA:   3'- gGCCGu---UCGUGaGCa---------GGCuUCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 160769 0.68 0.861139
Target:  5'- gCCGGCAuagccAGCAaUCGgaguUCCaauGGGGGGCu -3'
miRNA:   3'- -GGCCGU-----UCGUgAGC----AGGcu-UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 59819 0.68 0.845747
Target:  5'- gCGGCGAGaGCUCcguaaugcgCCGAAGGAaaaacuGGCg -3'
miRNA:   3'- gGCCGUUCgUGAGca-------GGCUUCCU------CCG- -5'
9652 5' -56.1 NC_002577.1 + 8181 0.68 0.837767
Target:  5'- aCCGGUgcguccGGGCGCUCGgCCGGGcGAacGGCg -3'
miRNA:   3'- -GGCCG------UUCGUGAGCaGGCUUcCU--CCG- -5'
9652 5' -56.1 NC_002577.1 + 128994 0.68 0.837767
Target:  5'- gCC-GCGGGUACgcgCG-CCGAguaugGGGGGGCg -3'
miRNA:   3'- -GGcCGUUCGUGa--GCaGGCU-----UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 125432 0.68 0.837767
Target:  5'- aCCGGUgcguccGGGCGCUCGgCCGGGcGAacGGCg -3'
miRNA:   3'- -GGCCG------UUCGUGAGCaGGCUUcCU--CCG- -5'
9652 5' -56.1 NC_002577.1 + 2739 0.68 0.832891
Target:  5'- aCCGGcCGAGUucauuguugggcuauGCUCGguuUUCGggGGGGGg -3'
miRNA:   3'- -GGCC-GUUCG---------------UGAGC---AGGCuuCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 130874 0.68 0.832891
Target:  5'- aCCGGcCGAGUucauuguugggcuauGCUCGguuUUCGggGGGGGg -3'
miRNA:   3'- -GGCC-GUUCG---------------UGAGC---AGGCuuCCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.