miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9653 5' -51.8 NC_002577.1 + 80358 0.66 0.990589
Target:  5'- -gCUCUU-CACGCAGCGgGGAGGGu- -3'
miRNA:   3'- ugGAGAGuGUGUGUCGUgUUUCCUgc -5'
9653 5' -51.8 NC_002577.1 + 117267 0.66 0.990589
Target:  5'- uACCUacaCACuCACGGCACGugguacguGGACGu -3'
miRNA:   3'- -UGGAga-GUGuGUGUCGUGUuu------CCUGC- -5'
9653 5' -51.8 NC_002577.1 + 97527 0.66 0.990589
Target:  5'- cGCCUCggUCGCGCGCgucucccgcccAGCAC---GGACGc -3'
miRNA:   3'- -UGGAG--AGUGUGUG-----------UCGUGuuuCCUGC- -5'
9653 5' -51.8 NC_002577.1 + 45856 0.66 0.982462
Target:  5'- gACCg-UUAUGCGCGGCAUAuuGGGGACu -3'
miRNA:   3'- -UGGagAGUGUGUGUCGUGU--UUCCUGc -5'
9653 5' -51.8 NC_002577.1 + 128968 0.66 0.982462
Target:  5'- cGCCUCgguccUUGCGCGCAGUACuuGaGACGa -3'
miRNA:   3'- -UGGAG-----AGUGUGUGUCGUGuuUcCUGC- -5'
9653 5' -51.8 NC_002577.1 + 4646 0.66 0.982462
Target:  5'- cGCCUCgguccUUGCGCGCAGUACuuGaGACGa -3'
miRNA:   3'- -UGGAG-----AGUGUGUGUCGUGuuUcCUGC- -5'
9653 5' -51.8 NC_002577.1 + 46503 0.67 0.96992
Target:  5'- uACCcCUUuCGCGCAGCACGAcagaAGGAa- -3'
miRNA:   3'- -UGGaGAGuGUGUGUCGUGUU----UCCUgc -5'
9653 5' -51.8 NC_002577.1 + 132120 0.68 0.966791
Target:  5'- uGCg-CUCGCGCGCgAGC-CAGAcGGACGg -3'
miRNA:   3'- -UGgaGAGUGUGUG-UCGuGUUU-CCUGC- -5'
9653 5' -51.8 NC_002577.1 + 1494 0.68 0.966791
Target:  5'- uGCg-CUCGCGCGCgAGC-CAGAcGGACGg -3'
miRNA:   3'- -UGgaGAGUGUGUG-UCGuGUUU-CCUGC- -5'
9653 5' -51.8 NC_002577.1 + 62011 0.68 0.96344
Target:  5'- uCCUCggGCGCGCcgucgccguccuGGCAUAGGGGACc -3'
miRNA:   3'- uGGAGagUGUGUG------------UCGUGUUUCCUGc -5'
9653 5' -51.8 NC_002577.1 + 91760 0.69 0.947694
Target:  5'- aGCCag-C-CGCACGGCGCGucuAAGGGCGg -3'
miRNA:   3'- -UGGagaGuGUGUGUCGUGU---UUCCUGC- -5'
9653 5' -51.8 NC_002577.1 + 103246 0.69 0.933309
Target:  5'- aGCCUUUaCAUACGUAGCACAGGuGGCGg -3'
miRNA:   3'- -UGGAGA-GUGUGUGUCGUGUUUcCUGC- -5'
9653 5' -51.8 NC_002577.1 + 72222 0.69 0.928011
Target:  5'- cGCUaUC-CGCGCACAGCACAucGGGuCGc -3'
miRNA:   3'- -UGG-AGaGUGUGUGUCGUGUuuCCU-GC- -5'
9653 5' -51.8 NC_002577.1 + 72934 0.7 0.916059
Target:  5'- cGCUUCUCGCGCAguccuucCAGCcugcCAAAGcGACGg -3'
miRNA:   3'- -UGGAGAGUGUGU-------GUCGu---GUUUC-CUGC- -5'
9653 5' -51.8 NC_002577.1 + 25548 0.7 0.904288
Target:  5'- gACCg--CACGCACGGCA--AGGGACu -3'
miRNA:   3'- -UGGagaGUGUGUGUCGUguUUCCUGc -5'
9653 5' -51.8 NC_002577.1 + 138946 0.7 0.900384
Target:  5'- cGCCgauUCAgACACcuccgucagccguccGGCGCGAGGGACGa -3'
miRNA:   3'- -UGGag-AGUgUGUG---------------UCGUGUUUCCUGC- -5'
9653 5' -51.8 NC_002577.1 + 158392 0.7 0.900384
Target:  5'- cGCCgauUCAgACACcuccgucagccguccGGCGCGAGGGACGa -3'
miRNA:   3'- -UGGag-AGUgUGUG---------------UCGUGUUUCCUGC- -5'
9653 5' -51.8 NC_002577.1 + 4110 0.71 0.861367
Target:  5'- gACCUCUCACACAa--CAC--AGGACa -3'
miRNA:   3'- -UGGAGAGUGUGUgucGUGuuUCCUGc -5'
9653 5' -51.8 NC_002577.1 + 129503 0.71 0.861367
Target:  5'- gACCUCUCACACAa--CAC--AGGACa -3'
miRNA:   3'- -UGGAGAGUGUGUgucGUGuuUCCUGc -5'
9653 5' -51.8 NC_002577.1 + 3409 0.73 0.792226
Target:  5'- cCUUCUCGgGCACcGCAcCGAAGGAUGg -3'
miRNA:   3'- uGGAGAGUgUGUGuCGU-GUUUCCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.