Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9654 | 5' | -54.1 | NC_002577.1 | + | 121949 | 0.66 | 0.972459 |
Target: 5'- aUCcgCGCGCCccucCGGACGCCGaGAgGGAu -3' miRNA: 3'- -AGa-GUGCGGa---GCUUGUGGC-CUgCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 3651 | 0.66 | 0.972459 |
Target: 5'- gCUCGagcccUGCCggCGGACugCaGGCGAAGa -3' miRNA: 3'- aGAGU-----GCGGa-GCUUGugGcCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 101511 | 0.66 | 0.972459 |
Target: 5'- --gCACGCUUCGAuuGCUgGGGCGAGu -3' miRNA: 3'- agaGUGCGGAGCUugUGG-CCUGCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 11665 | 0.66 | 0.972459 |
Target: 5'- aUCcgCGCGCCccucCGGACGCCGaGAgGGAu -3' miRNA: 3'- -AGa-GUGCGGa---GCUUGUGGC-CUgCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 129962 | 0.66 | 0.972459 |
Target: 5'- gCUCGagcccUGCCggCGGACugCaGGCGAAGa -3' miRNA: 3'- aGAGU-----GCGGa-GCUUGugGcCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 157802 | 0.66 | 0.969614 |
Target: 5'- --gCGCGCCgccgcCGGGCGCggguacucccuUGGACGAGGa -3' miRNA: 3'- agaGUGCGGa----GCUUGUG-----------GCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 139535 | 0.66 | 0.969614 |
Target: 5'- --gCGCGCCgccgcCGGGCGCggguacucccuUGGACGAGGa -3' miRNA: 3'- agaGUGCGGa----GCUUGUG-----------GCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 3499 | 0.66 | 0.96561 |
Target: 5'- cUCUCcggaucggugccguGCuGCCUgagaucgaGAGCAUCGGACGGAGc -3' miRNA: 3'- -AGAG--------------UG-CGGAg-------CUUGUGGCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 130115 | 0.66 | 0.96561 |
Target: 5'- cUCUCcggaucggugccguGCuGCCUgagaucgaGAGCAUCGGACGGAGc -3' miRNA: 3'- -AGAG--------------UG-CGGAg-------CUUGUGGCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 53693 | 0.66 | 0.963307 |
Target: 5'- aCUCAgGCC--GAugAUUGGACGggGc -3' miRNA: 3'- aGAGUgCGGagCUugUGGCCUGCuuC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 134900 | 0.66 | 0.963307 |
Target: 5'- gCUCgccgGCGCUUCuGcgcuacugaAugGCCGGGCGAAGg -3' miRNA: 3'- aGAG----UGCGGAG-C---------UugUGGCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 38349 | 0.66 | 0.963307 |
Target: 5'- aUUCGuCGCC-CGGccCGCCGGGCGAc- -3' miRNA: 3'- aGAGU-GCGGaGCUu-GUGGCCUGCUuc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 162427 | 0.66 | 0.963307 |
Target: 5'- gCUCgccgGCGCUUCuGcgcuacugaAugGCCGGGCGAAGg -3' miRNA: 3'- aGAG----UGCGGAG-C---------UugUGGCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 154531 | 0.66 | 0.959834 |
Target: 5'- gUUUCACGggccCCUUGggUGCUGGGgGGAGu -3' miRNA: 3'- -AGAGUGC----GGAGCuuGUGGCCUgCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 26685 | 0.67 | 0.956141 |
Target: 5'- uUCUCGCGCUgcagUCGAGCuuuuACCGcGGCGc-- -3' miRNA: 3'- -AGAGUGCGG----AGCUUG----UGGC-CUGCuuc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 72348 | 0.67 | 0.956141 |
Target: 5'- --cCACGCCUCcAACACCGGuucuaugcuAUGGAa -3' miRNA: 3'- agaGUGCGGAGcUUGUGGCC---------UGCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 122321 | 0.67 | 0.955759 |
Target: 5'- aUCUC-CGCUuaGAGCGCCGGuccggcgcuucccGCGAAc -3' miRNA: 3'- -AGAGuGCGGagCUUGUGGCC-------------UGCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 11293 | 0.67 | 0.955759 |
Target: 5'- aUCUC-CGCUuaGAGCGCCGGuccggcgcuucccGCGAAc -3' miRNA: 3'- -AGAGuGCGGagCUUGUGGCC-------------UGCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 8520 | 0.67 | 0.952223 |
Target: 5'- cCUCAUGCUcagacuccgugUCGAugGCgGGGgGggGg -3' miRNA: 3'- aGAGUGCGG-----------AGCUugUGgCCUgCuuC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 40251 | 0.67 | 0.952223 |
Target: 5'- cUCUCuauauGCGCCUCcauccuGCACCGGaaugGCGAGu -3' miRNA: 3'- -AGAG-----UGCGGAGcu----UGUGGCC----UGCUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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