miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9654 5' -54.1 NC_002577.1 + 1491 0.68 0.912475
Target:  5'- gCUCGCGCg-CGAGCcagaCGGACGGAc -3'
miRNA:   3'- aGAGUGCGgaGCUUGug--GCCUGCUUc -5'
9654 5' -54.1 NC_002577.1 + 3113 1.1 0.00447
Target:  5'- gUCUCACGCCUCGAACACCGGACGAAGg -3'
miRNA:   3'- -AGAGUGCGGAGCUUGUGGCCUGCUUC- -5'
9654 5' -54.1 NC_002577.1 + 3499 0.66 0.96561
Target:  5'- cUCUCcggaucggugccguGCuGCCUgagaucgaGAGCAUCGGACGGAGc -3'
miRNA:   3'- -AGAG--------------UG-CGGAg-------CUUGUGGCCUGCUUC- -5'
9654 5' -54.1 NC_002577.1 + 3651 0.66 0.972459
Target:  5'- gCUCGagcccUGCCggCGGACugCaGGCGAAGa -3'
miRNA:   3'- aGAGU-----GCGGa-GCUUGugGcCUGCUUC- -5'
9654 5' -54.1 NC_002577.1 + 6933 0.73 0.719887
Target:  5'- -gUUugGCCgguggaugagucgCGAugGCCGGACGggGc -3'
miRNA:   3'- agAGugCGGa------------GCUugUGGCCUGCuuC- -5'
9654 5' -54.1 NC_002577.1 + 7542 0.7 0.863198
Target:  5'- -aUCACGCCggggUCGAACGCgGGaaaauaaaaccguuGCGggGg -3'
miRNA:   3'- agAGUGCGG----AGCUUGUGgCC--------------UGCuuC- -5'
9654 5' -54.1 NC_002577.1 + 8520 0.67 0.952223
Target:  5'- cCUCAUGCUcagacuccgugUCGAugGCgGGGgGggGg -3'
miRNA:   3'- aGAGUGCGG-----------AGCUugUGgCCUgCuuC- -5'
9654 5' -54.1 NC_002577.1 + 11293 0.67 0.955759
Target:  5'- aUCUC-CGCUuaGAGCGCCGGuccggcgcuucccGCGAAc -3'
miRNA:   3'- -AGAGuGCGGagCUUGUGGCC-------------UGCUUc -5'
9654 5' -54.1 NC_002577.1 + 11665 0.66 0.972459
Target:  5'- aUCcgCGCGCCccucCGGACGCCGaGAgGGAu -3'
miRNA:   3'- -AGa-GUGCGGa---GCUUGUGGC-CUgCUUc -5'
9654 5' -54.1 NC_002577.1 + 15575 0.67 0.943699
Target:  5'- aCUUGCGgCagagugcauguUCGAugGCCGGGCGAc- -3'
miRNA:   3'- aGAGUGCgG-----------AGCUugUGGCCUGCUuc -5'
9654 5' -54.1 NC_002577.1 + 26685 0.67 0.956141
Target:  5'- uUCUCGCGCUgcagUCGAGCuuuuACCGcGGCGc-- -3'
miRNA:   3'- -AGAGUGCGG----AGCUUG----UGGC-CUGCuuc -5'
9654 5' -54.1 NC_002577.1 + 33440 0.7 0.850067
Target:  5'- uUCUCGgGUgCUCGAAaaugcacgcgUACCGGACGAGa -3'
miRNA:   3'- -AGAGUgCG-GAGCUU----------GUGGCCUGCUUc -5'
9654 5' -54.1 NC_002577.1 + 38349 0.66 0.963307
Target:  5'- aUUCGuCGCC-CGGccCGCCGGGCGAc- -3'
miRNA:   3'- aGAGU-GCGGaGCUu-GUGGCCUGCUuc -5'
9654 5' -54.1 NC_002577.1 + 40251 0.67 0.952223
Target:  5'- cUCUCuauauGCGCCUCcauccuGCACCGGaaugGCGAGu -3'
miRNA:   3'- -AGAG-----UGCGGAGcu----UGUGGCC----UGCUUc -5'
9654 5' -54.1 NC_002577.1 + 53478 0.7 0.857862
Target:  5'- -aUgACGCUUcCGAACGCCGGcguCGggGa -3'
miRNA:   3'- agAgUGCGGA-GCUUGUGGCCu--GCuuC- -5'
9654 5' -54.1 NC_002577.1 + 53693 0.66 0.963307
Target:  5'- aCUCAgGCC--GAugAUUGGACGggGc -3'
miRNA:   3'- aGAGUgCGGagCUugUGGCCUGCuuC- -5'
9654 5' -54.1 NC_002577.1 + 72348 0.67 0.956141
Target:  5'- --cCACGCCUCcAACACCGGuucuaugcuAUGGAa -3'
miRNA:   3'- agaGUGCGGAGcUUGUGGCC---------UGCUUc -5'
9654 5' -54.1 NC_002577.1 + 89693 0.69 0.900175
Target:  5'- --aCACGCCugUCGaAACACCGGAauCGGAc -3'
miRNA:   3'- agaGUGCGG--AGC-UUGUGGCCU--GCUUc -5'
9654 5' -54.1 NC_002577.1 + 91715 0.68 0.929155
Target:  5'- cUCUC-CGUUcucgUCGAaaacACAUCGGGCGAGGu -3'
miRNA:   3'- -AGAGuGCGG----AGCU----UGUGGCCUGCUUC- -5'
9654 5' -54.1 NC_002577.1 + 97543 0.71 0.808288
Target:  5'- gUCUCcCGCCcagcaCGGACGCCGaGGCGAc- -3'
miRNA:   3'- -AGAGuGCGGa----GCUUGUGGC-CUGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.