Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9654 | 5' | -54.1 | NC_002577.1 | + | 89693 | 0.69 | 0.900175 |
Target: 5'- --aCACGCCugUCGaAACACCGGAauCGGAc -3' miRNA: 3'- agaGUGCGG--AGC-UUGUGGCCU--GCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 38349 | 0.66 | 0.963307 |
Target: 5'- aUUCGuCGCC-CGGccCGCCGGGCGAc- -3' miRNA: 3'- aGAGU-GCGGaGCUu-GUGGCCUGCUuc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 157802 | 0.66 | 0.969614 |
Target: 5'- --gCGCGCCgccgcCGGGCGCggguacucccuUGGACGAGGa -3' miRNA: 3'- agaGUGCGGa----GCUUGUG-----------GCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 11665 | 0.66 | 0.972459 |
Target: 5'- aUCcgCGCGCCccucCGGACGCCGaGAgGGAu -3' miRNA: 3'- -AGa-GUGCGGa---GCUUGUGGC-CUgCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 138744 | 0.67 | 0.939087 |
Target: 5'- cCUCGCGCC--GGACGgCuGACGGAGg -3' miRNA: 3'- aGAGUGCGGagCUUGUgGcCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 15575 | 0.67 | 0.943699 |
Target: 5'- aCUUGCGgCagagugcauguUCGAugGCCGGGCGAc- -3' miRNA: 3'- aGAGUGCgG-----------AGCUugUGGCCUGCUuc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 3113 | 1.1 | 0.00447 |
Target: 5'- gUCUCACGCCUCGAACACCGGACGAAGg -3' miRNA: 3'- -AGAGUGCGGAGCUUGUGGCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 126681 | 0.73 | 0.719887 |
Target: 5'- -gUUugGCCgguggaugagucgCGAugGCCGGACGggGc -3' miRNA: 3'- agAGugCGGa------------GCUugUGGCCUGCuuC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 97543 | 0.71 | 0.808288 |
Target: 5'- gUCUCcCGCCcagcaCGGACGCCGaGGCGAc- -3' miRNA: 3'- -AGAGuGCGGa----GCUUGUGGC-CUGCUuc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 134900 | 0.66 | 0.963307 |
Target: 5'- gCUCgccgGCGCUUCuGcgcuacugaAugGCCGGGCGAAGg -3' miRNA: 3'- aGAG----UGCGGAG-C---------UugUGGCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 72348 | 0.67 | 0.956141 |
Target: 5'- --cCACGCCUCcAACACCGGuucuaugcuAUGGAa -3' miRNA: 3'- agaGUGCGGAGcUUGUGGCC---------UGCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 11293 | 0.67 | 0.955759 |
Target: 5'- aUCUC-CGCUuaGAGCGCCGGuccggcgcuucccGCGAAc -3' miRNA: 3'- -AGAGuGCGGagCUUGUGGCC-------------UGCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 117522 | 0.68 | 0.912475 |
Target: 5'- uUCUCAUGCgaCGAucaucgacuCACUGGAUGAAa -3' miRNA: 3'- -AGAGUGCGgaGCUu--------GUGGCCUGCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 26685 | 0.67 | 0.956141 |
Target: 5'- uUCUCGCGCUgcagUCGAGCuuuuACCGcGGCGc-- -3' miRNA: 3'- -AGAGUGCGG----AGCUUG----UGGC-CUGCuuc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 132123 | 0.68 | 0.912475 |
Target: 5'- gCUCGCGCg-CGAGCcagaCGGACGGAc -3' miRNA: 3'- aGAGUGCGgaGCUUGug--GCCUGCUUc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 125094 | 0.67 | 0.952223 |
Target: 5'- cCUCAUGCUcagacuccgugUCGAugGCgGGGgGggGg -3' miRNA: 3'- aGAGUGCGG-----------AGCUugUGgCCUgCuuC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 53693 | 0.66 | 0.963307 |
Target: 5'- aCUCAgGCC--GAugAUUGGACGggGc -3' miRNA: 3'- aGAGUgCGGagCUugUGGCCUGCuuC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 130115 | 0.66 | 0.96561 |
Target: 5'- cUCUCcggaucggugccguGCuGCCUgagaucgaGAGCAUCGGACGGAGc -3' miRNA: 3'- -AGAG--------------UG-CGGAg-------CUUGUGGCCUGCUUC- -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 157409 | 0.67 | 0.938613 |
Target: 5'- --gCGCGCCUCGuucucucGACcCUGGACGAu- -3' miRNA: 3'- agaGUGCGGAGC-------UUGuGGCCUGCUuc -5' |
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9654 | 5' | -54.1 | NC_002577.1 | + | 40251 | 0.67 | 0.952223 |
Target: 5'- cUCUCuauauGCGCCUCcauccuGCACCGGaaugGCGAGu -3' miRNA: 3'- -AGAG-----UGCGGAGcu----UGUGGCC----UGCUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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