miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9655 3' -52.4 NC_002577.1 + 124073 0.66 0.984406
Target:  5'- aUAGCCgGC-CGaACCcUACUcgGGCCc -3'
miRNA:   3'- -AUCGGaUGuGCaUGGaGUGAuaCCGG- -5'
9655 3' -52.4 NC_002577.1 + 9541 0.66 0.984406
Target:  5'- aUAGCCgGC-CGaACCcUACUcgGGCCc -3'
miRNA:   3'- -AUCGGaUGuGCaUGGaGUGAuaCCGG- -5'
9655 3' -52.4 NC_002577.1 + 152632 0.66 0.972831
Target:  5'- gGGCC-GCGCGUGCCaUUACgau-GCCg -3'
miRNA:   3'- aUCGGaUGUGCAUGG-AGUGauacCGG- -5'
9655 3' -52.4 NC_002577.1 + 158669 0.67 0.96992
Target:  5'- cGGCCU---CGUAcCCUCGCUcgGGUg -3'
miRNA:   3'- aUCGGAuguGCAU-GGAGUGAuaCCGg -5'
9655 3' -52.4 NC_002577.1 + 33654 0.67 0.96992
Target:  5'- gAGCUaugGCACGUACUUagACaAUGGCUg -3'
miRNA:   3'- aUCGGa--UGUGCAUGGAg-UGaUACCGG- -5'
9655 3' -52.4 NC_002577.1 + 133261 0.67 0.969004
Target:  5'- aGGCCU-CGCcggGCCUCauuucacggucgggGCUAUGGCa -3'
miRNA:   3'- aUCGGAuGUGca-UGGAG--------------UGAUACCGg -5'
9655 3' -52.4 NC_002577.1 + 353 0.67 0.969004
Target:  5'- aGGCCU-CGCcggGCCUCauuucacggucgggGCUAUGGCa -3'
miRNA:   3'- aUCGGAuGUGca-UGGAG--------------UGAUACCGg -5'
9655 3' -52.4 NC_002577.1 + 59396 0.67 0.966791
Target:  5'- uUAGCCgcUACGCGUcucccuaagguaGCgCUCGCgAUGGCg -3'
miRNA:   3'- -AUCGG--AUGUGCA------------UG-GAGUGaUACCGg -5'
9655 3' -52.4 NC_002577.1 + 51715 0.67 0.95986
Target:  5'- --aCCaACAUG-ACUUUGCUGUGGCCa -3'
miRNA:   3'- aucGGaUGUGCaUGGAGUGAUACCGG- -5'
9655 3' -52.4 NC_002577.1 + 57184 0.68 0.947694
Target:  5'- -cGCCUGCAaGUACUUC----UGGCCg -3'
miRNA:   3'- auCGGAUGUgCAUGGAGugauACCGG- -5'
9655 3' -52.4 NC_002577.1 + 129008 0.68 0.94221
Target:  5'- -cGCCgaguauggggggGCGCGUGCuCUC-CUAcGGCCg -3'
miRNA:   3'- auCGGa-----------UGUGCAUG-GAGuGAUaCCGG- -5'
9655 3' -52.4 NC_002577.1 + 4605 0.68 0.938355
Target:  5'- -cGCCgaguaugggggGCGCGUGCuCUC-CUAcGGCCg -3'
miRNA:   3'- auCGGa----------UGUGCAUG-GAGuGAUaCCGG- -5'
9655 3' -52.4 NC_002577.1 + 4468 0.7 0.890932
Target:  5'- gGGCCgucuUACACGcACgUCACUcUGGUCg -3'
miRNA:   3'- aUCGG----AUGUGCaUGgAGUGAuACCGG- -5'
9655 3' -52.4 NC_002577.1 + 129146 0.7 0.890932
Target:  5'- gGGCCgucuUACACGcACgUCACUcUGGUCg -3'
miRNA:   3'- aUCGG----AUGUGCaUGgAGUGAuACCGG- -5'
9655 3' -52.4 NC_002577.1 + 134248 0.74 0.703069
Target:  5'- cGGCC-GCGCGgGCgCUCGCUA-GGCCg -3'
miRNA:   3'- aUCGGaUGUGCaUG-GAGUGAUaCCGG- -5'
9655 3' -52.4 NC_002577.1 + 163080 0.74 0.703069
Target:  5'- cGGCC-GCGCGgGCgCUCGCUA-GGCCg -3'
miRNA:   3'- aUCGGaUGUGCaUG-GAGUGAUaCCGG- -5'
9655 3' -52.4 NC_002577.1 + 130667 0.82 0.298373
Target:  5'- gGGUCUucuuCACGUACCUCuCUAUGGCUg -3'
miRNA:   3'- aUCGGAu---GUGCAUGGAGuGAUACCGG- -5'
9655 3' -52.4 NC_002577.1 + 2947 0.82 0.298373
Target:  5'- gGGUCUucuuCACGUACCUCuCUAUGGCUg -3'
miRNA:   3'- aUCGGAu---GUGCAUGGAGuGAUACCGG- -5'
9655 3' -52.4 NC_002577.1 + 130895 1.12 0.004173
Target:  5'- gUAGCCUACACGUACCUCACUAUGGCCa -3'
miRNA:   3'- -AUCGGAUGUGCAUGGAGUGAUACCGG- -5'
9655 3' -52.4 NC_002577.1 + 2719 1.12 0.004173
Target:  5'- gUAGCCUACACGUACCUCACUAUGGCCa -3'
miRNA:   3'- -AUCGGAUGUGCAUGGAGUGAUACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.