miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9655 5' -50.4 NC_002577.1 + 156746 0.67 0.989611
Target:  5'- -gGGCUAaGGGGGGGUgGCGUaGGAGGAg -3'
miRNA:   3'- cgUCGGUaUCUCUCCA-UGCA-CUUCUU- -5'
9655 5' -50.4 NC_002577.1 + 140592 0.67 0.989611
Target:  5'- -gGGCUAaGGGGGGGUgGCGUaGGAGGAg -3'
miRNA:   3'- cgUCGGUaUCUCUCCA-UGCA-CUUCUU- -5'
9655 5' -50.4 NC_002577.1 + 138360 0.68 0.980688
Target:  5'- uCGGCgAccUGGAuGAGGUGCGcGAAGAAg -3'
miRNA:   3'- cGUCGgU--AUCU-CUCCAUGCaCUUCUU- -5'
9655 5' -50.4 NC_002577.1 + 158978 0.68 0.980688
Target:  5'- uCGGCgAccUGGAuGAGGUGCGcGAAGAAg -3'
miRNA:   3'- cGUCGgU--AUCU-CUCCAUGCaCUUCUU- -5'
9655 5' -50.4 NC_002577.1 + 156776 0.69 0.970171
Target:  5'- -gGGCUAaGGGGAGGUgGCGUaGGAGGAg -3'
miRNA:   3'- cgUCGGUaUCUCUCCA-UGCA-CUUCUU- -5'
9655 5' -50.4 NC_002577.1 + 140562 0.69 0.970171
Target:  5'- -gGGCUAaGGGGAGGUgGCGUaGGAGGAg -3'
miRNA:   3'- cgUCGGUaUCUCUCCA-UGCA-CUUCUU- -5'
9655 5' -50.4 NC_002577.1 + 26836 0.69 0.958822
Target:  5'- aGCAGCCcaucAUAGAguucgGAGGccuauugaaaagagUGCGUGAAGAu -3'
miRNA:   3'- -CGUCGG----UAUCU-----CUCC--------------AUGCACUUCUu -5'
9655 5' -50.4 NC_002577.1 + 39077 0.73 0.842525
Target:  5'- -uGGUCAUGGAGuGGGUACGUGGAa-- -3'
miRNA:   3'- cgUCGGUAUCUC-UCCAUGCACUUcuu -5'
9655 5' -50.4 NC_002577.1 + 92163 0.77 0.611274
Target:  5'- aGCAGCguUGGAGugcgcgaacuGGUGCGUGGAGAc -3'
miRNA:   3'- -CGUCGguAUCUCu---------CCAUGCACUUCUu -5'
9655 5' -50.4 NC_002577.1 + 130705 0.8 0.48612
Target:  5'- -uGGCCAUAGuGAGGUACGUGuAGGc -3'
miRNA:   3'- cgUCGGUAUCuCUCCAUGCACuUCUu -5'
9655 5' -50.4 NC_002577.1 + 2909 0.8 0.48612
Target:  5'- -uGGCCAUAGuGAGGUACGUGuAGGc -3'
miRNA:   3'- cgUCGGUAUCuCUCCAUGCACuUCUu -5'
9655 5' -50.4 NC_002577.1 + 130861 1.09 0.00936
Target:  5'- uGCAGCCAUAGAGAGGUACGUGAAGAAg -3'
miRNA:   3'- -CGUCGGUAUCUCUCCAUGCACUUCUU- -5'
9655 5' -50.4 NC_002577.1 + 2753 1.09 0.00936
Target:  5'- uGCAGCCAUAGAGAGGUACGUGAAGAAg -3'
miRNA:   3'- -CGUCGGUAUCUCUCCAUGCACUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.