miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9656 3' -51.2 NC_002577.1 + 2608 1.1 0.00675
Target:  5'- aCGCCCACCACAAAAAUAGACCCUGCAa -3'
miRNA:   3'- -GCGGGUGGUGUUUUUAUCUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 156013 0.66 0.99047
Target:  5'- cCGuCCCGCCACGGucuaaaucCCCUGCc -3'
miRNA:   3'- -GC-GGGUGGUGUUuuuaucu-GGGACGu -5'
9656 3' -51.2 NC_002577.1 + 2399 0.67 0.985279
Target:  5'- gGCCCaACCAUcacccuAAAGgcccGACCCUGCc -3'
miRNA:   3'- gCGGG-UGGUGu-----UUUUau--CUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 107990 0.67 0.981351
Target:  5'- aCGCCUACgGCGGAAcacGUAGAuucccagaaauuUCCUGCc -3'
miRNA:   3'- -GCGGGUGgUGUUUU---UAUCU------------GGGACGu -5'
9656 3' -51.2 NC_002577.1 + 14398 0.67 0.976685
Target:  5'- gGUCCcCCAUuGAAAUAGGCCCU-CGa -3'
miRNA:   3'- gCGGGuGGUGuUUUUAUCUGGGAcGU- -5'
9656 3' -51.2 NC_002577.1 + 126335 0.68 0.968159
Target:  5'- uCGUCCGCCACGGAAGcUGGaACCCc--- -3'
miRNA:   3'- -GCGGGUGGUGUUUUU-AUC-UGGGacgu -5'
9656 3' -51.2 NC_002577.1 + 156 0.66 0.992351
Target:  5'- aGCCCcgACCGUGAAAugAGGCCCgGCGa -3'
miRNA:   3'- gCGGG--UGGUGUUUUuaUCUGGGaCGU- -5'
9656 3' -51.2 NC_002577.1 + 163100 0.66 0.989813
Target:  5'- aGgCCGCC-CGGAAAUgcguagcGGACCCgUGCGc -3'
miRNA:   3'- gCgGGUGGuGUUUUUA-------UCUGGG-ACGU- -5'
9656 3' -51.2 NC_002577.1 + 130411 0.67 0.976685
Target:  5'- aGCgCAUCGCGugguguuaGAGGUGGAUCCUGUc -3'
miRNA:   3'- gCGgGUGGUGU--------UUUUAUCUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 118752 0.69 0.957624
Target:  5'- uCGCUUAaguuuUCAUAAAAGUGGAUCUUGCAc -3'
miRNA:   3'- -GCGGGU-----GGUGUUUUUAUCUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 125 0.75 0.715104
Target:  5'- aGCacaCCACCACAGAcucuGACCCUGCc -3'
miRNA:   3'- gCG---GGUGGUGUUUuuauCUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 159840 0.71 0.893118
Target:  5'- cCGCCgGCCACGAAcAGUgggaaaaaugccGGGCUCUGCu -3'
miRNA:   3'- -GCGGgUGGUGUUU-UUA------------UCUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 135646 0.66 0.986825
Target:  5'- gCGCCCgGCCACAA----GGGCCgaggaggCUGCGa -3'
miRNA:   3'- -GCGGG-UGGUGUUuuuaUCUGG-------GACGU- -5'
9656 3' -51.2 NC_002577.1 + 39104 0.66 0.992351
Target:  5'- uCGUCUACCACAAAGAagaaAGACCgaaaucGCAa -3'
miRNA:   3'- -GCGGGUGGUGUUUUUa---UCUGGga----CGU- -5'
9656 3' -51.2 NC_002577.1 + 151089 0.66 0.989541
Target:  5'- --aCCACCGCGcuucuacauccucuAAAuaaagcAGACCCUGCAa -3'
miRNA:   3'- gcgGGUGGUGU--------------UUUua----UCUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 7279 0.68 0.968159
Target:  5'- uCGUCCGCCACGGAAGcUGGaACCCc--- -3'
miRNA:   3'- -GCGGGUGGUGUUUUU-AUC-UGGGacgu -5'
9656 3' -51.2 NC_002577.1 + 61818 0.68 0.972377
Target:  5'- aCGCCCACCguuucaugcaaACGucauuacuuaagcacAGAAUAGAUCCcGCGa -3'
miRNA:   3'- -GCGGGUGG-----------UGU---------------UUUUAUCUGGGaCGU- -5'
9656 3' -51.2 NC_002577.1 + 95964 0.68 0.974055
Target:  5'- uGCUgACCGCAAAucgu-GCCCUGUAu -3'
miRNA:   3'- gCGGgUGGUGUUUuuaucUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 3203 0.67 0.976685
Target:  5'- aGCgCAUCGCGugguguuaGAGGUGGAUCCUGUc -3'
miRNA:   3'- gCGgGUGGUGU--------UUUUAUCUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 161692 0.66 0.986825
Target:  5'- gCGCCCgGCCACAA----GGGCCgaggaggCUGCGa -3'
miRNA:   3'- -GCGGG-UGGUGUUuuuaUCUGG-------GACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.