miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9656 5' -58.4 NC_002577.1 + 161028 0.67 0.795383
Target:  5'- cGCCuGGGCgGGCCgGUgG-AGAGCGGc -3'
miRNA:   3'- -CGGcCUUGgUCGGgUAgCgUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 160404 0.67 0.794505
Target:  5'- gGCCGGggUCguaacaaGGCUC--CGCGGAGCGc -3'
miRNA:   3'- -CGGCCuuGG-------UCGGGuaGCGUCUCGCc -5'
9656 5' -58.4 NC_002577.1 + 136933 0.67 0.794505
Target:  5'- gGCCGGggUCguaacaaGGCUC--CGCGGAGCGc -3'
miRNA:   3'- -CGGCCuuGG-------UCGGGuaGCGUCUCGCc -5'
9656 5' -58.4 NC_002577.1 + 9326 0.68 0.759249
Target:  5'- cGCUa-GGCUGGCCCGgggCGCGGAcGCGGu -3'
miRNA:   3'- -CGGccUUGGUCGGGUa--GCGUCU-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 124288 0.68 0.759249
Target:  5'- cGCUa-GGCUGGCCCGgggCGCGGAcGCGGu -3'
miRNA:   3'- -CGGccUUGGUCGGGUa--GCGUCU-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 135867 0.68 0.749929
Target:  5'- aUCGGGgugGCCAGgCCAUCGgaCGGAGCa- -3'
miRNA:   3'- cGGCCU---UGGUCgGGUAGC--GUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 38358 0.68 0.749929
Target:  5'- uGCCGGcGCCgaguucaauuGGCCUcuggCGCGG-GCGGa -3'
miRNA:   3'- -CGGCCuUGG----------UCGGGua--GCGUCuCGCC- -5'
9656 5' -58.4 NC_002577.1 + 161470 0.68 0.749929
Target:  5'- aUCGGGgcgGCCAGgCCAUCGgaCGGAGCa- -3'
miRNA:   3'- cGGCCU---UGGUCgGGUAGC--GUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 91765 0.68 0.721416
Target:  5'- aCCGuAGCCAGCCgCAcggCGCgucuaAGGGCGGa -3'
miRNA:   3'- cGGCcUUGGUCGG-GUa--GCG-----UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 7546 0.68 0.721416
Target:  5'- cGCCGGggUCGaacGCgggaaaauaaaaCCGUUGCGGGGgGGg -3'
miRNA:   3'- -CGGCCuuGGU---CG------------GGUAGCGUCUCgCC- -5'
9656 5' -58.4 NC_002577.1 + 126068 0.68 0.721416
Target:  5'- cGCCGGggUCGaacGCgggaaaauaaaaCCGUUGCGGGGgGGg -3'
miRNA:   3'- -CGGCCuuGGU---CG------------GGUAGCGUCUCgCC- -5'
9656 5' -58.4 NC_002577.1 + 31922 0.69 0.692252
Target:  5'- uGCCGGcuCCuacGCCCAUCGCGaAGUa- -3'
miRNA:   3'- -CGGCCuuGGu--CGGGUAGCGUcUCGcc -5'
9656 5' -58.4 NC_002577.1 + 69237 0.69 0.682424
Target:  5'- aGCCGGGAUauuG-CUAUCGC-GAGCGGu -3'
miRNA:   3'- -CGGCCUUGgu-CgGGUAGCGuCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 163064 0.69 0.681439
Target:  5'- cGCCGGAcaugcccGCCGGCCg--CGCGG-GCGc -3'
miRNA:   3'- -CGGCCU-------UGGUCGGguaGCGUCuCGCc -5'
9656 5' -58.4 NC_002577.1 + 134264 0.69 0.681439
Target:  5'- cGCCGGAcaugcccGCCGGCCg--CGCGG-GCGc -3'
miRNA:   3'- -CGGCCU-------UGGUCGGguaGCGUCuCGCc -5'
9656 5' -58.4 NC_002577.1 + 141739 0.69 0.661669
Target:  5'- uGCCGGAGCCGuGgCUGUgGUguguguaGGGGCGGg -3'
miRNA:   3'- -CGGCCUUGGU-CgGGUAgCG-------UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 155599 0.69 0.661669
Target:  5'- uGCCGGAGCCGuGgCUGUgGUguguguaGGGGCGGg -3'
miRNA:   3'- -CGGCCUUGGU-CgGGUAgCG-------UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 11700 0.7 0.603052
Target:  5'- aGCCGG--CCGGCCUgcaguUCGggaAGAGCGGg -3'
miRNA:   3'- -CGGCCuuGGUCGGGu----AGCg--UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 121913 0.7 0.603052
Target:  5'- aGCCGG--CCGGCCUgcaguUCGggaAGAGCGGg -3'
miRNA:   3'- -CGGCCuuGGUCGGGu----AGCg--UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 11120 0.7 0.603052
Target:  5'- aGCgCGGGACCGcgguaauaaagcGCCCgccGUCGCGGAuCGGa -3'
miRNA:   3'- -CG-GCCUUGGU------------CGGG---UAGCGUCUcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.