miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9657 3' -50.4 NC_002577.1 + 78969 0.66 0.996649
Target:  5'- -aGCCCUcc--GGCCUAAGCcugaGGCCc -3'
miRNA:   3'- gaCGGGGauuuCUGGAUUCGua--CUGG- -5'
9657 3' -50.4 NC_002577.1 + 104341 0.66 0.996649
Target:  5'- uCUGCCUCgggAGAGAugcCCUGAGgaGUG-CCg -3'
miRNA:   3'- -GACGGGGa--UUUCU---GGAUUCg-UACuGG- -5'
9657 3' -50.4 NC_002577.1 + 136244 0.66 0.996649
Target:  5'- cCUGuCCCCUcAGGACCUcGGUuuugcgGGCg -3'
miRNA:   3'- -GAC-GGGGAuUUCUGGAuUCGua----CUGg -5'
9657 3' -50.4 NC_002577.1 + 100522 0.66 0.996649
Target:  5'- aUGUCCCUGGAGuCCgguaCAUGuCCu -3'
miRNA:   3'- gACGGGGAUUUCuGGauucGUACuGG- -5'
9657 3' -50.4 NC_002577.1 + 161094 0.66 0.996649
Target:  5'- cCUGuCCCCUcAGGACCUcGGUuuugcgGGCg -3'
miRNA:   3'- -GAC-GGGGAuUUCUGGAuUCGua----CUGg -5'
9657 3' -50.4 NC_002577.1 + 100002 0.66 0.996058
Target:  5'- aUG-CCCUAccGACUgUAAGCAgGGCCg -3'
miRNA:   3'- gACgGGGAUuuCUGG-AUUCGUaCUGG- -5'
9657 3' -50.4 NC_002577.1 + 150224 0.66 0.995383
Target:  5'- aUGCCUauguagGAAGcACCUcucuGUAUGACCa -3'
miRNA:   3'- gACGGGga----UUUC-UGGAuu--CGUACUGG- -5'
9657 3' -50.4 NC_002577.1 + 87912 0.66 0.995383
Target:  5'- aUGUCCUUuuGGACC-GAGUguuuuGUGGCCc -3'
miRNA:   3'- gACGGGGAuuUCUGGaUUCG-----UACUGG- -5'
9657 3' -50.4 NC_002577.1 + 23763 0.66 0.995089
Target:  5'- -gGCCCCUAuaAAGGuCCUcaucgggaaacgcGaugaggauaguaaaAGCAUGGCCg -3'
miRNA:   3'- gaCGGGGAU--UUCU-GGA-------------U--------------UCGUACUGG- -5'
9657 3' -50.4 NC_002577.1 + 131275 0.66 0.994618
Target:  5'- --aCCCCUAAAGGCCUAAccccgaaCccGACCc -3'
miRNA:   3'- gacGGGGAUUUCUGGAUUc------GuaCUGG- -5'
9657 3' -50.4 NC_002577.1 + 2339 0.66 0.994618
Target:  5'- --aCCCCUAAAGGCCUAAccccgaaCccGACCc -3'
miRNA:   3'- gacGGGGAUUUCUGGAUUc------GuaCUGG- -5'
9657 3' -50.4 NC_002577.1 + 2273 0.66 0.993753
Target:  5'- -cGaCCCCUAAAcGCCUAAcCAcGACCc -3'
miRNA:   3'- gaC-GGGGAUUUcUGGAUUcGUaCUGG- -5'
9657 3' -50.4 NC_002577.1 + 51328 0.66 0.993753
Target:  5'- uUGCCCCgagcacGGACCccGGCAcGugCu -3'
miRNA:   3'- gACGGGGauu---UCUGGauUCGUaCugG- -5'
9657 3' -50.4 NC_002577.1 + 142473 0.66 0.993473
Target:  5'- -aGCCCCUucucgauucggcucGGAGcuaGCCgggaGAGaCGUGACCg -3'
miRNA:   3'- gaCGGGGA--------------UUUC---UGGa---UUC-GUACUGG- -5'
9657 3' -50.4 NC_002577.1 + 154864 0.66 0.993473
Target:  5'- -aGCCCCUucucgauucggcucGGAGcuaGCCgggaGAGaCGUGACCg -3'
miRNA:   3'- gaCGGGGA--------------UUUC---UGGa---UUC-GUACUGG- -5'
9657 3' -50.4 NC_002577.1 + 11068 0.67 0.99278
Target:  5'- -aGCCCCcGGcgcGGGCCgcGGCcgGACa -3'
miRNA:   3'- gaCGGGGaUU---UCUGGauUCGuaCUGg -5'
9657 3' -50.4 NC_002577.1 + 122545 0.67 0.99278
Target:  5'- -aGCCCCcGGcgcGGGCCgcGGCcgGACa -3'
miRNA:   3'- gaCGGGGaUU---UCUGGauUCGuaCUGg -5'
9657 3' -50.4 NC_002577.1 + 136403 0.67 0.99278
Target:  5'- -cGCCCCccgGGGGACCccGGUucGACCc -3'
miRNA:   3'- gaCGGGGa--UUUCUGGauUCGuaCUGG- -5'
9657 3' -50.4 NC_002577.1 + 160934 0.67 0.99278
Target:  5'- -cGCCCCccgGGGGACCccGGUucGACCc -3'
miRNA:   3'- gaCGGGGa--UUUCUGGauUCGuaCUGG- -5'
9657 3' -50.4 NC_002577.1 + 41541 0.67 0.99214
Target:  5'- -cGCUCCUAuaagaggagucGAGGCCacgUGucgcggcccaacagaAGCGUGACCg -3'
miRNA:   3'- gaCGGGGAU-----------UUCUGG---AU---------------UCGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.