Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9660 | 5' | -62.5 | NC_002577.1 | + | 134096 | 0.66 | 0.58063 |
|
Target: 5'- cGGCGGGgAUgcaGCGUGCGGCucGGCCUa -3' miRNA: 3'- aUCGCUCgUA---CGCGCGCCGc-CUGGGa -5' |
|||||||
| 9660 | 5' | -62.5 | NC_002577.1 | + | 163232 | 0.66 | 0.58063 |
|
Target: 5'- cGGCGGGgAUgcaGCGUGCGGCucGGCCUa -3' miRNA: 3'- aUCGCUCgUA---CGCGCGCCGc-CUGGGa -5' |
|||||||
| 9660 | 5' | -62.5 | NC_002577.1 | + | 102057 | 0.66 | 0.610131 |
|
Target: 5'- gUGGaCGuGC-UGCGCGUGGCGaagcaGCCCa -3' miRNA: 3'- -AUC-GCuCGuACGCGCGCCGCc----UGGGa -5' |
|||||||
| 9660 | 5' | -62.5 | NC_002577.1 | + | 125695 | 0.66 | 0.617041 |
|
Target: 5'- cGGCGAGUcgGCGgagaaaagguggauCGCGaGCGcGAUCCg -3' miRNA: 3'- aUCGCUCGuaCGC--------------GCGC-CGC-CUGGGa -5' |
|||||||
| 9660 | 5' | -62.5 | NC_002577.1 | + | 7919 | 0.66 | 0.617041 |
|
Target: 5'- cGGCGAGUcgGCGgagaaaagguggauCGCGaGCGcGAUCCg -3' miRNA: 3'- aUCGCUCGuaCGC--------------GCGC-CGC-CUGGGa -5' |
|||||||
| 9660 | 5' | -62.5 | NC_002577.1 | + | 77505 | 0.66 | 0.629887 |
|
Target: 5'- -uGCGGGCAUuCGCGUGGaaaCGGGCgCg -3' miRNA: 3'- auCGCUCGUAcGCGCGCC---GCCUGgGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home