miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
967 5' -54.5 NC_000902.1 + 24060 0.66 0.801453
Target:  5'- cGCCAcUGGCUGaccauCCCUGUACUuucagGCu -3'
miRNA:   3'- -CGGUuAUCGGCg----GGGGCAUGGuua--CG- -5'
967 5' -54.5 NC_000902.1 + 38518 0.66 0.801453
Target:  5'- uGCCGGUccccguucgccGGuuGCCCCgacaGgGCCGGUGUc -3'
miRNA:   3'- -CGGUUA-----------UCggCGGGGg---CaUGGUUACG- -5'
967 5' -54.5 NC_000902.1 + 49257 0.66 0.791773
Target:  5'- cGUgAAUAGCCGCCCugcgCCGcAUUAAUcGCc -3'
miRNA:   3'- -CGgUUAUCGGCGGG----GGCaUGGUUA-CG- -5'
967 5' -54.5 NC_000902.1 + 31212 0.66 0.771926
Target:  5'- gGCCAcacuuuauuGUGGaUCGCCCCUGUA---GUGCu -3'
miRNA:   3'- -CGGU---------UAUC-GGCGGGGGCAUgguUACG- -5'
967 5' -54.5 NC_000902.1 + 27305 0.66 0.761781
Target:  5'- cGCCAc---CUGCUCCgGUACC-GUGCg -3'
miRNA:   3'- -CGGUuaucGGCGGGGgCAUGGuUACG- -5'
967 5' -54.5 NC_000902.1 + 53674 0.66 0.751504
Target:  5'- cGCaaggGGCCGUauuacUCCCGUACCA--GCa -3'
miRNA:   3'- -CGguuaUCGGCG-----GGGGCAUGGUuaCG- -5'
967 5' -54.5 NC_000902.1 + 44437 0.66 0.751504
Target:  5'- cGCCAG-AGCCGgaaCCUUCGUAagccacauCCAGUGUa -3'
miRNA:   3'- -CGGUUaUCGGC---GGGGGCAU--------GGUUACG- -5'
967 5' -54.5 NC_000902.1 + 56957 0.67 0.730596
Target:  5'- uCCGGUGGCUGUaaaaCCCCGUccuUCAggGCg -3'
miRNA:   3'- cGGUUAUCGGCG----GGGGCAu--GGUuaCG- -5'
967 5' -54.5 NC_000902.1 + 32354 0.68 0.654916
Target:  5'- uCCAcAUAacGCUGCCCCUGUGUCAggGCg -3'
miRNA:   3'- cGGU-UAU--CGGCGGGGGCAUGGUuaCG- -5'
967 5' -54.5 NC_000902.1 + 46506 0.71 0.472787
Target:  5'- uGCCAccaguUGGCCGCCaacacucaguuUCUGUcuuGCCGGUGCa -3'
miRNA:   3'- -CGGUu----AUCGGCGG-----------GGGCA---UGGUUACG- -5'
967 5' -54.5 NC_000902.1 + 50604 0.82 0.110004
Target:  5'- aGCCGGUAGCC-CUUCaCGUACCGGUGCu -3'
miRNA:   3'- -CGGUUAUCGGcGGGG-GCAUGGUUACG- -5'
967 5' -54.5 NC_000902.1 + 46702 1.13 0.000682
Target:  5'- cGCCAAUAGCCGCCCCCGUACCAAUGCc -3'
miRNA:   3'- -CGGUUAUCGGCGGGGGCAUGGUUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.