miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9670 3' -55.6 NC_002577.1 + 76633 0.66 0.937535
Target:  5'- -cGGACGGaucuCGgACAAGGG-CgCCGCCg -3'
miRNA:   3'- guUCUGUC----GCgUGUUCCUaGgGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 58008 0.66 0.932603
Target:  5'- ---aACAGCGUucACGAGG---CCCGCCa -3'
miRNA:   3'- guucUGUCGCG--UGUUCCuagGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 23964 0.66 0.932603
Target:  5'- gAGGAaacCGGCGgACAuuuauuGGAUgCCUCGCCc -3'
miRNA:   3'- gUUCU---GUCGCgUGUu-----CCUA-GGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 115625 0.66 0.932603
Target:  5'- -uGGAgAGCGC-CGAGGAaaCCCUGgCa -3'
miRNA:   3'- guUCUgUCGCGuGUUCCUa-GGGGCgG- -5'
9670 3' -55.6 NC_002577.1 + 158415 0.66 0.931077
Target:  5'- -uAGGC-GCGUGCGggacgagagccgugGGGcgUCCCGCCg -3'
miRNA:   3'- guUCUGuCGCGUGU--------------UCCuaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 138922 0.66 0.931077
Target:  5'- -uAGGC-GCGUGCGggacgagagccgugGGGcgUCCCGCCg -3'
miRNA:   3'- guUCUGuCGCGUGU--------------UCCuaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 4293 0.66 0.927433
Target:  5'- gUAAGACGGC-C-CAGGacgaagucccGcgCCCCGCCg -3'
miRNA:   3'- -GUUCUGUCGcGuGUUC----------CuaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 129321 0.66 0.927433
Target:  5'- gUAAGACGGC-C-CAGGacgaagucccGcgCCCCGCCg -3'
miRNA:   3'- -GUUCUGUCGcGuGUUC----------CuaGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 117614 0.66 0.924217
Target:  5'- aCGAGGCAcCGCAUugggacauguucucaGAcGGAUCCgUCGCCa -3'
miRNA:   3'- -GUUCUGUcGCGUG---------------UU-CCUAGG-GGCGG- -5'
9670 3' -55.6 NC_002577.1 + 76992 0.66 0.922025
Target:  5'- gAGGAgAG-GCAgAAGGGgcgCCCCGUa -3'
miRNA:   3'- gUUCUgUCgCGUgUUCCUa--GGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 73163 0.66 0.916378
Target:  5'- ------cGCGCACAGcGAccguccucuuuUCCCCGCCg -3'
miRNA:   3'- guucuguCGCGUGUUcCU-----------AGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 125953 0.66 0.910494
Target:  5'- aCGGGGCGcucaaCGCACAGGGGauaggaagaauuUCCCCucgGCCc -3'
miRNA:   3'- -GUUCUGUc----GCGUGUUCCU------------AGGGG---CGG- -5'
9670 3' -55.6 NC_002577.1 + 124443 0.66 0.910494
Target:  5'- --cGAUGGCGCggGCGGGGGagUCCGUCg -3'
miRNA:   3'- guuCUGUCGCG--UGUUCCUagGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 7661 0.66 0.910494
Target:  5'- aCGGGGCGcucaaCGCACAGGGGauaggaagaauuUCCCCucgGCCc -3'
miRNA:   3'- -GUUCUGUc----GCGUGUUCCU------------AGGGG---CGG- -5'
9670 3' -55.6 NC_002577.1 + 9171 0.66 0.910494
Target:  5'- --cGAUGGCGCggGCGGGGGagUCCGUCg -3'
miRNA:   3'- guuCUGUCGCG--UGUUCCUagGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 162381 0.67 0.904375
Target:  5'- --cGGCGGCGaaaGC-GGGGUCCUuuCGCCc -3'
miRNA:   3'- guuCUGUCGCg--UGuUCCUAGGG--GCGG- -5'
9670 3' -55.6 NC_002577.1 + 64080 0.67 0.904375
Target:  5'- ---uACGGCgGCAUGAGGcgCUCCGCa -3'
miRNA:   3'- guucUGUCG-CGUGUUCCuaGGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 26079 0.67 0.904375
Target:  5'- gCGGGACAGCuccaaaaGCAGGcGUCUCCGCg -3'
miRNA:   3'- -GUUCUGUCGcg-----UGUUCcUAGGGGCGg -5'
9670 3' -55.6 NC_002577.1 + 160498 0.67 0.904375
Target:  5'- --cGACcccGCGCGCAuuauGGAcgguUCCCUGUCg -3'
miRNA:   3'- guuCUGu--CGCGUGUu---CCU----AGGGGCGG- -5'
9670 3' -55.6 NC_002577.1 + 136840 0.67 0.904375
Target:  5'- --cGACcccGCGCGCAuuauGGAcgguUCCCUGUCg -3'
miRNA:   3'- guuCUGu--CGCGUGUu---CCU----AGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.